fixed synonymtypedef issue (see EBISPOT/OLS#182)

and made new release

plant-ontology.obo

@@ -15040,7 +15040,7 @@ synonym: "inflorescence rachis (exact)" EXACT [FNA:78c2e094-f6db-4d95-b8bb-3e2bd
 synonym: "inflorescence rhachis (exact)" EXACT [FNA:f76f9272-ef24-4be8-a9b3-3da4c06bd8cf]
 synonym: "primary inflorescence axis (exact)" EXACT []
 synonym: "primer orden del eje de la inflorescencia (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
-synonym: "第一花序軸 (Japanese, exact)" EXACT [NIG:Yukiko_Yamazaki] {http://purl.obolibrary.org/obo/po#Japanese=""}
+synonym: "第一花序軸 (Japanese, exact)" EXACT JAPANESE [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:260
 xref: PO_GIT:667
 is_a: PO:0020122 ! inflorescence axis

po.obo

@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: releases/2017-12-12
+data-version: releases/2017-12-14
 saved-by: cooperl
 subsetdef: Angiosperm "Term for angiosperms"
 subsetdef: Arabidopsis "Term used for Arabidopsis"
@@ -609,7 +609,7 @@ name: crown root
 namespace: plant_anatomy
 def: "A shoot-borne nodal root (PO:0003005) formed at a stem base (PO:0008039)." [POC:Laurel_Cooper, TAIR_curator:Katica_Ilic]
 subset: reference
-synonym: "adventitious root  (broad)" BROAD []
+synonym: " adventitious root  (broad)" BROAD []
 synonym: "ra&#237z en corona (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
 synonym: "冠根 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:163
@@ -6096,7 +6096,7 @@ namespace: plant_anatomy
 def: "A small staminate flower (PO:0025600) that is part of a tassel spikelet (PO:0006309)." [PMID:12015291, POC:Laurel_Cooper, POC:Ramona_Walls]
 comment: The tassel floret (PO:0006310) initiates both stamens (PO:0009029) and carpels (PO:0009030), but all carpels abort during development. Found in Zea spp.
 subset: Maize
-synonym: "florete del penacho (borla) (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
+synonym: " florete del penacho (borla) (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
 synonym: "雄穂小花 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:537
 is_a: PO:0009082 ! spikelet floret
@@ -6210,7 +6210,7 @@ is_a: PO:0009081 ! higher order inflorescence axis
 id: PO:0006322
 name: third order inflorescence axis
 namespace: plant_anatomy
-def: "A higher order inflorescence axis (PO:0009081) that develops from an inflorescence axillary meristem (PO:0009105) of a second order inflorescence axis (PO:0006322)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Dario_Cavaliere", comment="NYBG:Brandon_Sinn"}
+def: "A higher order inflorescence axis (PO:0009081) that develops from an inflorescence axillary meristem (PO:0009105) of a second order inflorescence axis (PO:0006322)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Brandon_Sinn", comment="NYBG:Dario_Cavaliere"}
 synonym: "eje de tercero orden de la inflorescencia  (Spanish, exact)" EXACT Spanish []
 synonym: "second order inflorescence branch (exact)" EXACT []
 synonym: "second order paraclade (exact)" EXACT []
@@ -9288,7 +9288,7 @@ is_obsolete: true
 id: PO:0007529
 name: E emerged root elongation
 namespace: plant_structure_development_stage
-def: "OBSOLETE. The stage at which the emerged root starts to elongate." [Gramene:Anuradha_Pujar]
+def: "OBSOLETE. The stage at which the emerged root starts to elongate. " [Gramene:Anuradha_Pujar]
 synonym: "emerged crown root elongation (related)" RELATED []
 synonym: "emerged lateral root elongation (related)" RELATED []
 synonym: "emrged primary root elongation (related)" RELATED []
@@ -11115,7 +11115,7 @@ alt_id: PO:0020117
 alt_id: PO:0020118
 alt_id: PO:0020119
 alt_id: PO:0020120
-def: "A reproductive shoot system (PO:0025082) that has as parts all of the shoot axes (PO:0025029) and flowers (PO:0009046; must have two or more) distal to the most distal leaf (PO:0009025)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Dario_Cavaliere", comment="NYBG:Brandon_Sinn"}
+def: "A reproductive shoot system (PO:0025082) that has as parts all of the shoot axes (PO:0025029) and flowers (PO:0009046; must have two or more) distal to the most distal leaf (PO:0009025)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Brandon_Sinn", comment="NYBG:Dario_Cavaliere"}
 comment: An inflorescence is a reproductive shoot system from which at least two flowers develop. The growth pattern of an inflorescence may be monopodial (single main shoot axis), sympodial (growth only occurs from axillary meristems), or both. An inflorescence axis (PO:0020122) can be determinate or indeterminate. An inflorescence flower pedicel (PO:0009052) is the ultimate axis in an inflorescence. The flower (PO:0009046) of many plants, for example Magnolia spp., is solitary.
 subset: Angiosperm
 subset: reference
@@ -11149,7 +11149,7 @@ id: PO:0009052
 name: inflorescence flower pedicel
 namespace: plant_anatomy
 def: "A flower pedicel (PO:0030113) that bears a flower (PO:0009046) in an inflorescence (PO:0009049)." [ISBN:0716710072, NYBG:Brandon_Sinn, NYBG:Dario_Cavaliere, POC:Laurel_Cooper]
-comment: An inflorescence flower pedicel is the ultimate shoot axis (PO:0025029) in an inflorescence (PO:0009049). {xref="NYBG:Brandon_Sinn", xref="NYBG:Dario_Cavaliere"}
+comment: An inflorescence flower pedicel is the ultimate shoot axis (PO:0025029) in an inflorescence (PO:0009049). {xref="NYBG:Dario_Cavaliere", xref="NYBG:Brandon_Sinn"}
 subset: Angiosperm
 subset: reference
 subset: Tomato
@@ -13236,7 +13236,7 @@ id: PO:0020122
 name: inflorescence axis
 namespace: plant_anatomy
 def: "A shoot axis (PO:0025029) that is part of an inflorescence (PO:0009049)." [POC:curators]
-comment: An inflorescence axis (PO:0020122) has either a determinate apex, which terminates in a flower meristem (PO:0000229), or has an indeterminate apex, which terminates in an inflorescence apical meristem (PO:0009108).  An inflorescence pedicel (PO:0009052) is the simplest example of a determinate inflorescence axis. {xref="NYBG:Brandon_Sinn", comment="POC:Laurel_Cooper", xref="NYBG:Dario_Cavaliere"}
+comment: An inflorescence axis (PO:0020122) has either a determinate apex, which terminates in a flower meristem (PO:0000229), or has an indeterminate apex, which terminates in an inflorescence apical meristem (PO:0009108).  An inflorescence pedicel (PO:0009052) is the simplest example of a determinate inflorescence axis. {comment="POC:Laurel_Cooper", xref="NYBG:Dario_Cavaliere", xref="NYBG:Brandon_Sinn"}
 subset: Angiosperm
 subset: TraitNet
 synonym: "eje de la inflorescencia (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
@@ -13970,10 +13970,10 @@ name: embryo sac cell
 namespace: plant_anatomy
 def: "A native plant cell (PO:0025606) that is part of an embryo sac (PO:0025074)." [POC:Laurel_Cooper, POC:Ramona_Walls]
 subset: CL
+synonym: " 胚嚢細胞 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 synonym: "c&#233lula megagametof&#237tica (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
 synonym: "embryo sac cell (related)" RELATED []
 synonym: "megagametophytic cell (exact)" EXACT []
-synonym: "胚嚢細胞 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:508
 is_a: PO:0025606 ! native plant cell
 intersection_of: PO:0025606 ! native plant cell
@@ -15045,13 +15045,13 @@ id: PO:0025104
 name: first order inflorescence axis
 namespace: plant_anatomy
 def: "An inflorescence axis (PO:0020122) that is the primary or main axis of an inflorescence (PO:0009049)." [POC:Ramona_Walls]
-comment: Monopodial inflorescences, such as a raceme, have a centrally-located main axis; this axis is a first order inflorescence axis. In contrast, sympodial inflorescences, such as the riphidium, do not have a centrally-located main axis. The basal-most portion of a first order inflorescence axis is referred to as a peduncle (PO:0009053). {xref="NYBG:Brandon_Sinn", xref="NYBG:Dario_Cavaliere"}
+comment: Monopodial inflorescences, such as a raceme, have a centrally-located main axis; this axis is a first order inflorescence axis. In contrast, sympodial inflorescences, such as the riphidium, do not have a centrally-located main axis. The basal-most portion of a first order inflorescence axis is referred to as a peduncle (PO:0009053). {xref="NYBG:Dario_Cavaliere", xref="NYBG:Brandon_Sinn"}
 subset: Angiosperm
 synonym: "inflorescence rachis (exact)" EXACT [FNA:78c2e094-f6db-4d95-b8bb-3e2bdaebf764]
 synonym: "inflorescence rhachis (exact)" EXACT [FNA:f76f9272-ef24-4be8-a9b3-3da4c06bd8cf]
 synonym: "primary inflorescence axis (exact)" EXACT []
 synonym: "primer orden del eje de la inflorescencia (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
-synonym: "第一花序軸 (Japanese, exact)" EXACT [NIG:Yukiko_Yamazaki] {http://purl.obolibrary.org/obo/po#Japanese=""}
+synonym: "第一花序軸 (Japanese, exact)" EXACT JAPANESE [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:260
 xref: PO_GIT:667
 is_a: PO:0020122 ! inflorescence axis
@@ -15063,7 +15063,7 @@ creation_date: 2011-01-05T08:41:49Z
 id: PO:0025105
 name: fourth order inflorescence axis
 namespace: plant_anatomy
-def: "A higher order inflorescence axis (PO:0009081) that develops from an inflorescence axillary meristem (PO:0009105) of a third order inflorescence axis (PO:0025105)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Dario_Cavaliere", comment="NYBG:Brandon_Sinn"}
+def: "A higher order inflorescence axis (PO:0009081) that develops from an inflorescence axillary meristem (PO:0009105) of a third order inflorescence axis (PO:0025105)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Brandon_Sinn", comment="NYBG:Dario_Cavaliere"}
 synonym: "eje de cuarto orden de la inflorescencia (Spanish, exact)" EXACT Spanish []
 synonym: "tertiary inflorescence branch (exact)" EXACT []
 synonym: "third order inflorescence branch (exact)" EXACT []
@@ -15079,7 +15079,7 @@ creation_date: 2011-01-05T08:56:27Z
 id: PO:0025106
 name: fifth order inflorescence axis
 namespace: plant_anatomy
-def: "A higher order inflorescence axis (PO:0009081) that develops from an inflorescence axillary meristem (PO:0009105) of a fourth order inflorescence axis (PO:0025106)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Dario_Cavaliere", comment="NYBG:Brandon_Sinn"}
+def: "A higher order inflorescence axis (PO:0009081) that develops from an inflorescence axillary meristem (PO:0009105) of a fourth order inflorescence axis (PO:0025106)." [POC:Laurel_Cooper, POC:Ramona_Walls] {comment="NYBG:Brandon_Sinn", comment="NYBG:Dario_Cavaliere"}
 synonym: "eje de quinto orden de la inflorescencia (Spanish, exact)" EXACT Spanish []
 synonym: "fourth order inflorescence branch (exact)" EXACT []
 synonym: "第四花序分枝 (Japanese, related)" RELATED [NIG:Yukiko_Yamazaki]
@@ -15571,8 +15571,8 @@ id: PO:0025138
 name: fused collective tepal structure
 namespace: plant_anatomy
 def: "A collective tepal structure (PO:0025021) in which there are at least two fused tepals (PO:0025137)." [PATO:0000642, POC:curators, POC:Laurel_Cooper]
+synonym: " connate tepal structure (exact)" EXACT []
 synonym: "compound tepal (related)" RELATED [CO_125:0000021]
-synonym: "connate tepal structure (exact)" EXACT []
 synonym: "estrutura colectiva de t&#233palo fusionado (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
 synonym: "syntepalous perianth (exact)" EXACT []
 synonym: "複数の融合花被片構造 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
@@ -18503,8 +18503,8 @@ name: awn
 namespace: plant_anatomy
 def: "A cardinal organ part that is a slender, more or less straight and stiff, fine-pointed, terminal or subterminal appendage of a glume, lemma, or palea." [FNA:glossary]
 comment: Found in a spikelet of Poaceae. Sometimes the awn is a continuation of the bearing structure's central primary vein.
-synonym: "arista (exact)" EXACT [FNA:399ba59a-deb1-4bc9-b7e5-ed2b89700d5c]
 synonym: "arista (exact)" EXACT [FNA:5e6f29b2-6a37-4663-888b-7cb315ef277e]
+synonym: "arista (exact)" EXACT [FNA:399ba59a-deb1-4bc9-b7e5-ed2b89700d5c]
 synonym: "arista (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
 synonym: "bristle (broad)" BROAD [FNA:78121d02-e7db-45eb-b1b7-011d5026beae]
 synonym: "seta (related)" RELATED [FNA:c751440c-a7b3-4997-aed8-47f8254fd05f]
@@ -20740,7 +20740,7 @@ namespace: plant_anatomy
 def: "A native plant cell (PO:0025606) that is the larger, distal cell arising from the first division of an archegonium initial cell (PO:0025510)." [PMID:17041880, POC:Laurel_Cooper]
 comment: The archegonium central cell divides asymmetrically to form a smaller ventral canal cell (PO:0025524) and a larger archegonium egg cell (PO:0025122). It is larger than the archegonium neck canal cell (PO:0030065), which also develops from the archegonium initial cell (PO:0025510). The archegonium central cell only occurs in gymnosperms.
 subset: Gymnosperms
-synonym: "造卵器中央細胞 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
+synonym: " 造卵器中央細胞 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:182
 is_a: PO:0025606 ! native plant cell
 relationship: develops_from PO:0025510 ! archegonium initial cell
@@ -21327,8 +21327,8 @@ name: mesarch protoxylem
 namespace: plant_anatomy
 def: "A portion of protoxylem (PO:0000272) tissue in which the maturation of primary xylem (PO:0005849) of the shoot system (PO:0009006) progresses both centripetally and centrifugally from the center." [ISBN:0471245208, POC:Laurel_Cooper]
 comment: Mesarch protoxylem is found in ferns and cycads stems.
-synonym: "protoxilema mesarco (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
-synonym: "中原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
+synonym: " protoxilema mesarco (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
+synonym: " 中原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:534
 is_a: PO:0000272 ! protoxylem
 created_by: Laurel_Cooper
@@ -21339,8 +21339,8 @@ id: PO:0025554
 name: exarch protoxylem
 namespace: plant_anatomy
 def: "A portion of protoxylem (PO:0000272) tissue in which the maturation of primary xylem (PO:0005849) progresses centripetally, the oldest elements (protoxylem) are farthest from the center of the plant axis (PO:0025004)." [ISBN:0471245208, POC:Laurel_Cooper]
+synonym: " 外原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 synonym: "protoxilema exarco (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
-synonym: "外原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:534
 is_a: PO:0000272 ! protoxylem
 created_by: Laurel_Cooper
@@ -21363,8 +21363,8 @@ id: PO:0025556
 name: shoot system exarch protoxylem
 namespace: plant_anatomy
 def: "A portion of exarch protoxylem (PO:002554) tissue in which the maturation of primary xylem (PO:0005849) of the shoot system (PO:0009006) progresses centripetally, with the oldest elements (protoxylem) farthest from the center of the plant axis (PO:0025004)." [ISBN:0471245208, POC:Laurel_Cooper]
+synonym: " シュート組織外原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 synonym: "protoxilema exarco del sistema del epiblasto (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
-synonym: "シュート組織外原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:534
 is_a: PO:0025554 ! exarch protoxylem
 created_by: Laurel_Cooper
@@ -21400,8 +21400,8 @@ id: PO:0025559
 name: diarch protoxylem
 namespace: plant_anatomy
 def: "A portion of root exarch protoxylem (PO:0025555) tissue in which the primary xylem (PO:0005849) of the root system (PO:0025025) has two protoxylem strands or poles, and differentiation progresses centripetally, with the oldest elements (protoxylem) farthest from the center of the plant axis (PO:0025004)." [ISBN:0471245208, POC:Laurel_Cooper]
+synonym: " 二原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 synonym: "protoxilema diarco (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
-synonym: "二原型原生木部 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
 xref: PO_GIT:534
 is_a: PO:0025555 ! root system exarch protoxylem
 created_by: Laurel_Cooper

po.owl

@@ -1,7 +1,6 @@
 <?xml version="1.0"?>
 <rdf:RDF xmlns="http://purl.obolibrary.org/obo/po.owl#"
      xml:base="http://purl.obolibrary.org/obo/po.owl"
-     xmlns:po1="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/po#"
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
@@ -12,7 +11,7 @@
      xmlns:dc="http://purl.org/dc/elements/1.1/"
      xmlns:po="http://purl.obolibrary.org/obo/po#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/po.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/po/releases/2017-12-12/po.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/po/releases/2017-12-14/po.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/po/imports/ncbitaxon_import.owl"/>
         <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL part_of NCBITaxon:33090</oboInOwl:treat-xrefs-as-genus-differentia>
         <oboInOwl:treat-xrefs-as-is_a rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CARO</oboInOwl:treat-xrefs-as-is_a>
@@ -414,12 +413,6 @@
 
 
 
-    <!-- http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/po#Japanese -->
-
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/po#Japanese"/>
-
-
-
     <!-- http://www.w3.org/2000/01/rdf-schema#comment -->
 
     <owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
@@ -53056,7 +53049,7 @@
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">第一花序軸 (Japanese, exact)</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIG:Yukiko_Yamazaki</oboInOwl:hasDbXref>
-        <po1:Japanese rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></po1:Japanese>
+        <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/po#JAPANESE"/>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PO_0025104"/>
@@ -80761,5 +80754,5 @@ Examples: green ash (Fraxinus pennsylvanicum) and tree-of-heaven (Ailanthus alti
 
 
 
-<!-- Generated by the OWL API (version 4.2.6.20160910-2108) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.2.6) https://github.com/owlcs/owlapi -->