Implement some suggestions from repo-review tool

- Add concurrency for workflows (so repeated pushes on the same branch cancel previous workflow run)
- Add dependabot for GHA version updating
- Add prettier as formatter (removing Biome as it didn't format the needed files)
- --show-fixes in ruff config

Used https://learn.scientific-python.org/development/guides/repo-review/ to highlight suggested changes in project configuration. Some items (upload-artifact version change, nox/tox integration, spell checker, pytest options) weren't included as they add  maintainence burden beyond their benefits, or hinder development (codespell).

.github/dependabot.yml

@@ -0,0 +1,6 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"

.github/workflows/ci.yml

@@ -5,11 +5,13 @@ on:
       - "master"
       - "test-me/*"
   pull_request:
-    branches:
-      - "*"
   schedule:
     - cron: "0 7 * * 1" # Run every Monday at 7:00 UTC
 
+concurrency:
+  group: branch-${{ github.head_ref }}
+  cancel-in-progress: true
+
 defaults:
   run:
     shell: bash -el {0}
@@ -82,7 +84,7 @@ jobs:
           name: Integration test report
           path: ${{ matrix.os }}_integration_test_report.html
   typechecking:
-    name: mypy
+    name: mypy --install-types
     runs-on: ubuntu-latest
     steps:
       - name: Checkout

.pre-commit-config.yaml

@@ -13,11 +13,11 @@ repos:
     rev: v0.5.6
     hooks:
       - id: ruff
-        args: [ --fix ]
+        args: [--fix, --show-fixes]
       - id: ruff
         name: ruff (isort jupyter)
         args: [--select, I, --fix]
-        types_or: [ jupyter ]
+        types_or: [jupyter]
       - id: ruff-format
         types_or: [ python, jupyter ]
   - repo: https://github.com/biomejs/pre-commit
@@ -31,9 +31,9 @@ repos:
     hooks:
       - id: flake8
         name: pydoclint
-        files: 'none'
+        files: "none"
         # files: parcels/fieldset.py # put here instead of in config file due to https://github.com/pre-commit/pre-commit-hooks/issues/112#issuecomment-215613842
         args:
-        - --select=DOC103 # TODO: Expand coverage to other codes
+          - --select=DOC103 # TODO: Expand coverage to other codes
         additional_dependencies:
           - pydoclint[flake8]

codecov.yml

@@ -13,6 +13,5 @@ comment:
   require_base: false
   require_head: true
   hide_project_coverage: true
-
 # When modifying this file, please validate using
 # curl -X POST --data-binary @codecov.yml https://codecov.io/validate

environment.yml

@@ -38,7 +38,6 @@ dependencies:
   - types-tqdm
   - types-psutil
 
-
   # Linting
   - pre_commit
 

pyproject.toml

@@ -54,7 +54,6 @@ local_scheme = "no-local-version"
 python_files = ["test_*.py", "example_*.py", "*tutorial*"]
 
 [tool.ruff]
-target-version = "py310"
 line-length = 120
 
 [tool.ruff.lint]