Merge pull request #1772 from OceanParcels/CROCO_fix_sigma_calculation #363
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| name: ci | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| - "test-me/*" | |
| pull_request: | |
| schedule: | |
| - cron: "0 7 * * 1" # Run every Monday at 7:00 UTC | |
| concurrency: | |
| group: branch-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| unit-test: | |
| name: "py${{ matrix.python-version }} | ${{ matrix.os }} | unit tests" | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos, ubuntu, windows] | |
| python-version: ["3.13"] | |
| include: | |
| - os: ubuntu | |
| python-version: "3.10" | |
| - os: ubuntu | |
| python-version: "3.11" | |
| - os: ubuntu | |
| python-version: "3.12" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Conda and parcels | |
| uses: ./.github/actions/install-parcels | |
| with: | |
| environment-file: environment.yml | |
| python-version: ${{ matrix.python-version }} | |
| - name: Unit test | |
| run: | | |
| coverage run -m pytest -v -s --html=${{ matrix.os }}_${{ matrix.python-version }}_unit_test_report.html --self-contained-html tests | |
| coverage xml | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| if: matrix.python-version == '3.13' | |
| with: | |
| flags: unit-tests | |
| - name: Upload test results | |
| if: ${{ always() }} # Always run this step, even if tests fail | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Unittest report ${{ matrix.os }}-${{ matrix.python-version }} | |
| path: ${{ matrix.os }}_${{ matrix.python-version }}_unit_test_report.html | |
| integration-test: | |
| name: "py${{ matrix.python-version }} | ${{ matrix.os }} | integration tests" | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos, ubuntu, windows] | |
| python-version: ["3.13"] | |
| include: | |
| - os: ubuntu | |
| python-version: "3.10" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Conda and parcels | |
| uses: ./.github/actions/install-parcels | |
| with: | |
| environment-file: environment.yml | |
| - name: Integration test | |
| run: | | |
| coverage run -m pytest -v -s --nbval-lax -k "not documentation" --html="${{ matrix.os }}_${{ matrix.python-version }}_integration_test_report.html" --self-contained-html docs/examples | |
| coverage xml | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| flags: integration-tests | |
| - name: Upload test results | |
| if: ${{ always() }} # Always run this step, even if tests fail | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Integration test report ${{ matrix.os }}-${{ matrix.python-version }} | |
| path: ${{ matrix.os }}_${{ matrix.python-version }}_integration_test_report.html | |
| merge-test-artifacts: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - unit-test | |
| - integration-test | |
| steps: | |
| - name: Merge Artifacts | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: Testing reports | |
| pattern: "* report *" | |
| typechecking: | |
| name: mypy | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Conda and parcels | |
| uses: ./.github/actions/install-parcels | |
| with: | |
| environment-file: environment.yml | |
| - run: conda install lxml # dep for report generation | |
| - name: Typechecking | |
| run: | | |
| mypy --install-types --non-interactive parcels --cobertura-xml-report mypy_report | |
| - name: Upload mypy coverage to Codecov | |
| uses: codecov/[email protected] | |
| if: ${{ always() }} # Upload even on error of mypy | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| file: mypy_report/cobertura.xml | |
| flags: mypy | |
| fail_ci_if_error: false |