Collaborative. Reproducible. Science.

These materials are available as a book at http://ohi-science.org/data-science-training. (Alternative link).

Please clone or download https://github.com/OHI-Science/data-science-training to accompany this training.

Rendering

To render this book in RStudio: Build tab > Build Book. Or on the command line:

rmarkdown::render_site(encoding = 'UTF-8')

This will build the HTML and PDF versions of the book into the docs/ folder, which should not be directly edited (and occassionally completely deleted before rendering to remove old unused files).

Teaching Setup

This book as been used for Software Carpentry workshops and the OHI Fellows program (recordings on the OHI-Science YouTube Channel).

Prior to teaching:

• open a clean RStudio session with default panes
• github chapter: since my-repo has been created, consider [placename]-repo e.g. whoi-repo
• before ggplot2 chapter: install.packages('tidyverse')

Acknowledgements

Many thanks to the creators of bookdown:

• Yihui Xie (2016). bookdown: Authoring Books and Technical Documents with R Markdown. R package version 0.3.9.
• Yihui Xie (2016). bookdown: Authoring Books and Technical Documents with R Markdown. Chapman and Hall/CRC. ISBN 978-1138700109