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Adding option to override database thread settings for CM & SCCS #191

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merged 1 commit into from
Dec 4, 2024
Merged

Adding option to override database thread settings for CM & SCCS #191

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8 changes: 8 additions & 0 deletions R/Module-CohortMethod.R
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Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,14 @@ CohortMethodModule <- R6::R6Class(
jobContext <- private$jobContext
multiThreadingSettings <- CohortMethod::createDefaultMultiThreadingSettings(jobContext$moduleExecutionSettings$maxCores)

# Provide hook to allow for overriding the number of threads
# used for database operations
getDbCohortMethodDataThreads <- as.integer(getOption("strategus.CohortMethodModule.getDbCohortMethodDataThreads"))
if (isTRUE(getDbCohortMethodDataThreads > 0)) {
private$.message(paste0("Detected strategus.CohortMethodModule.getDbCohortMethodDataThreads - setting value to: ", getDbCohortMethodDataThreads))
multiThreadingSettings$getDbCohortMethodDataThreads <- getDbCohortMethodDataThreads
}

args <- jobContext$settings
args$connectionDetails <- connectionDetails
args$cdmDatabaseSchema <- jobContext$moduleExecutionSettings$cdmDatabaseSchema
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8 changes: 8 additions & 0 deletions R/Module-SelfControlledCaseSeries.R
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Expand Up @@ -25,6 +25,14 @@ SelfControlledCaseSeriesModule <- R6::R6Class(
jobContext <- private$jobContext
sccsMultiThreadingSettings <- SelfControlledCaseSeries::createDefaultSccsMultiThreadingSettings(jobContext$moduleExecutionSettings$maxCores)

# Provide hook to allow for overriding the number of threads
# used for database operations
getDbSccsDataThreads <- as.integer(getOption("strategus.SelfControlledCaseSeriesModule.getDbSccsDataThreads"))
if (isTRUE(getDbSccsDataThreads > 0)) {
private$.message(paste0("Detected strategus.SelfControlledCaseSeriesModule.getDbSccsDataThreads - setting value to: ", getDbSccsDataThreads))
sccsMultiThreadingSettings$getDbSccsDataThreads <- getDbSccsDataThreads
}

args <- jobContext$settings
args$connectionDetails <- connectionDetails
args$cdmDatabaseSchema <- jobContext$moduleExecutionSettings$cdmDatabaseSchema
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