Code

Release 2.0.1#94

Code

Merged

egillax merged 99 commits intomainOHDSI/DeepPatientLevelPrediction:mainfrom developOHDSI/DeepPatientLevelPrediction:developCopy head branch name to clipboardNov 3, 2023

+174-157

Commits

Commits on Nov 14, 2022

• speed up data conversion about 3-5x

  egillax

  committed
  64fce91

• updated news

  egillax

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  30e67fd

• make sure tensorList matches dataset length

  egillax

  committed
  131c434

• user integers for tensorList

  egillax

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  38504b3

Commits on Dec 15, 2022

• test a different way of getting torch binaries

  egillax

  committed
  5d89faa

• test a different way of getting torch binaries

  egillax

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  2f8d6d6

• fix tidyselect warnings

  egillax

  committed
  e79a43f

• Merge branch 'main' into 43-hotfix-lantern-binaries

  egillax

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  6c69427

• Update description and news

  egillax

  committed
  887fac9

• remove torch install env variable from actions

  egillax

  committed
  72f813e

Commits on Dec 16, 2022

• merge hotfix to develop

  egillax

  committed
  d66c47e

Commits on Jan 20, 2023

• fixed dataset

  egillax

  committed
  ad0ad19

• fix numericalIndex and address pull warning

  egillax

  committed
  03ff99b

Commits on Jan 26, 2023

• Allow dimToken and numHeads to take the form of vectors

  lhjohn

  committed
  517f675

• Merge pull request #47 from OHDSI/transformer-bug

  Show description for b87b769
  lhjohn

  authored
  b87b769

Commits on Jan 27, 2023

• Modeltype fix (#48)

  Show description for dfca29a
  egillax

  authored
  dfca29a

Commits on Feb 13, 2023

• update default ResNet and Transformer to have custom LR and WD

  egillax

  committed
  65302bd

Commits on Feb 15, 2023

• Add seed for sampling hyperparameter combinations (#50)

  Show description for 353e0ba
  lhjohn

  authored
  353e0ba

Commits on Mar 1, 2023

• Lr find (#51)

  Show description for 926e7d0
  egillax

  authored
  926e7d0

Commits on Mar 5, 2023

• Derive dimension of feedforward block from embedding dimension (#53)

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  lhjohn

  authored
  e580c2a

• Divisible check for Transformer not comprehensive (#55)

  Show description for fba85ec
  lhjohn

  authored
  fba85ec

Commits on Mar 6, 2023

• Update NEWS.md

  egillax

  authored
  e50d2e4

Commits on Mar 22, 2023

• Merge branch 'main' into develop

  egillax

  authored
  b66de7f

• update website and docs

  egillax

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  051ea88

• remove docs folder from code branches

  egillax

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  793338a

• render dev website

  egillax

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  d0cb45b

• fix action

  egillax

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  609df5b

• fix action

  egillax

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  3330c28

• fix badge in readme

  egillax

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  dcb9423

• prepare version for release

  egillax

  authored
  ce5e235

Commits on Mar 23, 2023

• Update DESCRIPTION

  egillax

  authored
  2d07b6b

Commits on Mar 24, 2023

• modelType as attribute and tests to cover database upload

  egillax

  committed
  05fecc2

• modelType as attribute and tests to cover database upload

  egillax

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  32a7e23

• Merge branch '59-hotfix-modelType' of https://github.com/OHDSI/DeepPatientLevelPrediction into 59-hotfix-modelType

  egillax

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  0a0ac73

• Merge branch '59-hotfix-modelType' of https://github.com/OHDSI/DeepPatientLevelPrediction into 59-hotfix-modelType

  egillax

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  85ce433

• Merge branch '59-hotfix-modelType' of https://github.com/OHDSI/DeepPatientLevelPrediction into 59-hotfix-modelType

  egillax

  committed
  6d433a3

• fix dependanceis

  egillax

  committed
  c5a984f

• prepare version and news for release

  egillax

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  7541a38

• merged with hotfix branch

  egillax

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  3b02ce6

• modelType attribute back to modelSettings functions

  egillax

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  4cd2e30

• Merge branch 'develop' of https://github.com/OHDSI/DeepPatientLevelPrediction into develop

  egillax

  committed
  a390d4e

• Merge branch 'main' into develop

  egillax

  authored
  db13265

Commits on Mar 27, 2023

• Update DESCRIPTION

  egillax

  authored
  9c19173

Commits on Apr 16, 2023

• debug actions

  egillax

  committed
  808ead8

Commits on Apr 17, 2023

• Update R_CDM_check_hades.yaml

  egillax

  authored
  8e1de7f

• torch install environment variable

  egillax

  committed
  d18d579

• Merge branch 'debug-actions' of https://github.com/OHDSI/DeepPatientLevelPrediction into debug-actions

  egillax

  committed
  55bfca2

• update version and news

  egillax

  committed
  510f4f1

• merged with debug-actions

  egillax

  committed
  5e09d1d

Commits on Apr 18, 2023

• add device as expression with tests (#66)

  egillax

  authored
  a1cb2e7

• Merge branch 'main' into develop

  egillax

  authored
  01ce148

• remove torchopt

  egillax

  committed
  2113a48

• update news and version

  egillax

  committed
  575d2e5

• fix docs

  egillax

  committed
  20d4a0d

Commits on Apr 19, 2023

• update version number

  egillax

  committed
  f97b37f

Commits on Apr 24, 2023

• LRFinder works with device fun (#68)

  egillax

  authored
  783f417

• update version and news

  egillax

  committed
  0a6f9de

• Merge branch 'main' into develop

  egillax

  authored
  58df70c

Commits on Apr 25, 2023

• update version

  egillax

  committed
  2883b5e

Commits on Jun 18, 2023

• fix bug when test subject has no features

  egillax

  committed
  8a01ed7

• Add parameter caching for training persistence and continuity (#63)

  Show description for e555710
  

  lhjohn

  and

  egillax

  authored
  e555710

• fix incs issue

  egillax

  committed
  1e640ee

• Merge branch 'develop' of https://github.com/OHDSI/DeepPatientLevelPrediction into develop

  egillax

  committed
  6326cd6

• Release version and news updated

  egillax

  committed
  5d9dc59

• Merge branch 'main' into develop

  egillax

  authored
  af02541

• Release and NEWS

  egillax

  committed
  506b940

Commits on Jun 22, 2023

• Resolve an issue with hidden dimension ratio (#74)

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  lhjohn

  and

  egillax

  authored
  74608ff

Commits on Jul 20, 2023

• Cache single hyperparameter combination (#78)

  lhjohn

  authored
  ba60c28

Commits on Aug 28, 2023

• Change backend to pytorch (#80)

  egillax

  authored
  bd9b357

• Merge branch 'main' into develop

  egillax

  authored
  04c2b36

• fix dataset

  egillax

  committed
  e501124

Commits on Sep 7, 2023

• update PLP version in DESCRIPTION

  egillax

  committed
  31ef832

• integer handling in python and input checks (#83)

  Show description for 66b8c84
  egillax

  authored
  66b8c84

• Ensure that param search is completed in empty cache test (#84)

  lhjohn

  authored
  85be689

• use ubuntu 22.04 in CI (#85)

  egillax

  authored
  4c83897

Commits on Sep 8, 2023

• Update NEWS.md

  egillax

  authored
  904e926

Commits on Sep 13, 2023

• Update DESCRIPTION

  egillax

  authored
  ff9e22e

Commits on Oct 6, 2023

• Only cache best prediction

  lhjohn

  committed
  216c7af

• Clean up

  lhjohn

  committed
  2220ff2

• Add logger message when caching

  lhjohn

  committed
  9f8d23a

• Add test to ensure prediction is cached for optimal parameters

  lhjohn

  committed
  f93a53f

• Resolve an issue with case sensitivity on Ubuntu

  lhjohn

  committed
  53af472

• Merge pull request #90 from OHDSI/88-reduce-cache-size

  Show description for 1f50fa5
  lhjohn

  authored
  1f50fa5

Commits on Oct 10, 2023

• Fix lr schedule (#91)

  Show description for 84bbb18
  egillax

  authored
  84bbb18

Commits on Oct 12, 2023

• Fix numerical embeddings + add tests (#92)

  Show description for 2d8f9af
  egillax

  authored
  2d8f9af

• Fix transformer (#93)

  Show description for 56279c8
  egillax

  authored
  56279c8

• Merge branch 'main' into develop

  egillax

  authored
  e4f158f

• fix sneaky typo

  egillax

  committed
  d056998

Commits on Oct 13, 2023

• fix quosures

  egillax

  committed
  def727f

• optimize tests

  egillax

  committed
  bdf8bba

Commits on Oct 17, 2023

• fix hardcoded learning rate and add seed for sampling batch

  egillax

  committed
  ced60d1

• remove incorrect import

  egillax

  committed
  357b14e

Commits on Oct 18, 2023

• Type cast batch size to int (#96)

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  lhjohn

  and

  egillax

  authored
  74c346f

Commits on Oct 21, 2023

• Add fix to the full cache issue (#99)

  Show description for 69b8bec
  

  egillax

  and

  xj2193

  authored
  69b8bec

Commits on Oct 22, 2023

• improve docs (#100)

  egillax

  authored
  9bbe364

Commits on Oct 26, 2023

• dont track example

  egillax

  committed
  dac66a0

Commits on Oct 30, 2023

• fix numerical features order issue

  egillax

  committed
  20e855b

Commits on Oct 31, 2023

• updated news

  egillax

  committed
  7b31c73

• update NEWS

  egillax

  committed
  61bd834