update ubuntu, github actions and python on CI

OHDSI · Oct 7, 2024 · 7b6729b · 7b6729b
1 parent 04cd731
commit 7b6729b
Showing 1 changed file with 9 additions and 9 deletions.
diff --git a/.github/workflows/R_CDM_check_hades.yaml b/.github/workflows/R_CDM_check_hades.yaml
@@ -22,7 +22,7 @@ jobs:
         config:
           - {os: windows-latest, r: 'release'}
           - {os: macOS-latest, r: 'release'}
-          - {os: ubuntu-22.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
+          - {os: ubuntu-24.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/noble/latest"}
 
     env:
       GITHUB_PAT: ${{ secrets.GH_TOKEN }}
@@ -45,15 +45,15 @@ jobs:
       CDM5_SQL_SERVER_USER: ${{ secrets.CDM5_SQL_SERVER_USER }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
 
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
-          python-version: '3.10' 
+          python-version: '3.12' 
 
       - uses: r-lib/actions/setup-tinytex@v2
 
@@ -79,7 +79,7 @@ jobs:
         shell: Rscript {0}
         run: |
           python_packages <- 
-            c("polars", "tqdm", "connectorx", "pyarrow", "pynvml", "numpy==1.26.4")
+            c("polars", "tqdm", "connectorx", "pyarrow", "pynvml", "numpy")
           
           library(reticulate)
           virtualenv_create("r-reticulate", Sys.which("python"), packages=python_packages)
@@ -96,19 +96,19 @@ jobs:
           check-dir: '"check"'
 
       - name: Install covr
-        if: runner.os == 'ubuntu-22.04'
+        if: runner.os == 'ubuntu-24.04'
         run: |
           remotes::install_cran("covr")
         shell: Rscript {0}
 
       - name: Test coverage
-        if: runner.os == 'ubuntu-22.04'
+        if: runner.os == 'ubuntu-24.04'
         run: covr::codecov(token = "${{ secrets.CODECOV_TOKEN }}")
         shell: Rscript {0}
 
       - name: Upload source package
         if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/main'
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: package_tarball
           path: check/*.tar.gz
@@ -125,7 +125,7 @@ jobs:
 
     steps:
 
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0