fix numericalData edgecase and build pkgdown site

OHDSI · Jul 25, 2022 · 0a9bce1 · 0a9bce1
1 parent e4d5e55
commit 0a9bce1
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Showing 42 changed files with 45 additions and 3,619 deletions.
diff --git a/R/Dataset.R b/R/Dataset.R
@@ -66,13 +66,9 @@ Dataset <- torch::dataset(
       numericalData <-numericalData %>% group_by(columnId) %>% mutate(newId = dplyr::cur_group_id())
       indices <- torch::torch_tensor(cbind(numericalData$rowId, numericalData$newId), dtype=torch::torch_long())$t_()
       values <- torch::torch_tensor(numericalData$covariateValue,dtype=torch::torch_float32())
-      tryCatch({
       self$num <- torch::torch_sparse_coo_tensor(indices=indices,
                                             values=values, 
-                                            size=c(max(dataCat$rowId),sum(numericalIndex)))$to_dense()},
-      error= function(e) {
-        browser()
-      })
+                                            size=c(self$target$shape,sum(numericalIndex)))$to_dense()
     }  
   },
 

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -27,7 +27,7 @@ navbar:
       href: articles/Installing.html
     github:
       icon: fa-github fa-lg
-      href: https://github.com/OHDSI/PatientLevelPrediction
+      href: https://github.com/OHDSI/DeepPatientLevelPrediction
     hades:
       text: hadesLogo
       href: https://ohdsi.github.io/Hades
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/BuildingDeepModels.html b/docs/articles/BuildingDeepModels.html
diff --git a/docs/articles/BuildingDeepModels_files/header-attrs-2.11/header-attrs.js b/docs/articles/BuildingDeepModels_files/header-attrs-2.11/header-attrs.js
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -4,5 +4,5 @@ pkgdown_sha: ~
 articles:
   BuildingDeepModels: BuildingDeepModels.html
   Installing: Installing.html
-last_built: 2022-07-25T13:39Z
+last_built: 2022-07-25T15:28Z
 
diff --git a/docs/reference/Dataset.html b/docs/reference/Dataset.html
diff --git a/docs/reference/DeepPatientLevelPrediction.html b/docs/reference/DeepPatientLevelPrediction.html
diff --git a/docs/reference/EarlyStopping.html b/docs/reference/EarlyStopping.html
diff --git a/docs/reference/Estimator.html b/docs/reference/Estimator.html
diff --git a/docs/reference/Rplot001.png b/docs/reference/Rplot001.png
diff --git a/docs/reference/doubleLayerNN.html b/docs/reference/doubleLayerNN.html
diff --git a/docs/reference/fitDeepNNTorch.html b/docs/reference/fitDeepNNTorch.html
diff --git a/docs/reference/fitEstimator.html b/docs/reference/fitEstimator.html
diff --git a/docs/reference/fitResNet_plp5.html b/docs/reference/fitResNet_plp5.html