usages of planteome ontologies, see #451 Planteome/plant-trait-ontolo…

…gy#423

ontology/eo.md

@@ -22,6 +22,17 @@ license:
 publications:
   - id: http://www.ncbi.nlm.nih.gov/pubmed/22847540
     title: "Ontologies as integrative tools for plant science."
+usages:
+  - user: http://planteome.org/
+    description: Planteome uses EO to describe traits for genes and germplasm
+    examples:
+      - url: http://browser.planteome.org/amigo/term/EO:0007174
+        description: Genes and proteins annotated to cold temperature regiment
+  - user: http://gramene.org/
+    description: Gramene uses EO for the annotation of plant genes and QTLs
+    examples:
+      - url: http://archive.gramene.org/db/ontology/search?id=EO:0007174
+        description: Gramene annotations to cold temperature regiment
 ---
 
 A structured, controlled vocabulary for the representation of plant environmental conditions.

ontology/po.md

@@ -38,6 +38,25 @@ license:
 taxon:
   id: NCBITaxon:33090
   label: Viridiplantae
+usages:
+  - user: http://planteome.org/
+    description: Planteome uses PO to describe location of tissue expression for genes in viridiplantae
+    examples:
+      - url: http://browser.planteome.org/amigo/term/PO:0025034
+        description: Genes and proteins annotate to leaf
+  - user: http://maize.jcvi.org/
+    description: Maize CELL genomics DB uses PO to annotate images
+    examples:
+      - url: http://maize.jcvi.org/cellgenomics/geneDB_list.php?filter=3
+  - user: http://maizegdb.org/
+    description: MaizeGDB uses PO for annotation of genes
+    examples:
+      - url: http://maizegdb.org/gene_center/gene/GRMZM5G863962
+  - user: http://gramene.org/
+    description: Gramene uses PO for the annotation of plant genes
+    examples:
+      - url: http://archive.gramene.org/db/ontology/search?id=PO:0025034
+        description: Gramene annotations to leaf from Arabidopsis
 ---
 
 The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. The PO is under active development to expand to encompass terms and annotations from all plants.

ontology/to.md

@@ -35,6 +35,17 @@ tracker: https://github.com/Planteome/plant-trait-ontology/issues
 publications:
   - id: http://www.ncbi.nlm.nih.gov/pubmed/22847540
     title: "Ontologies as integrative tools for plant science."
+usages:
+  - user: http://planteome.org/
+    description: Planteome uses TO to describe traits for genes and germplasm
+    examples:
+      - url: http://browser.planteome.org/amigo/term/TO:0000286
+        description: Genes and proteins annotated to submergence tolerance, including SUB1
+  - user: http://gramene.org/
+    description: Gramene uses PO for the annotation of plant genes and QTLs
+    examples:
+      - url: http://archive.gramene.org/db/ontology/search?id=TO:0000286
+        description: Gramene annotations to submergence tolerance
 ---
 
 A controlled vocabulary of describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant.