Fix documentation issues and add core function docstrings#61
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Fix documentation issues and add core function docstrings#61
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- Fix typo in optimization.md: optimzed_model → optimized_model - Add missing imports in examples.md code blocks - Use exported names directly (SWMPartition, SWMModel, MultiSitePartition) instead of MolecularEvolution.* prefix where applicable - Qualify ParameterHandling.value_flatten for clarity - Add note about internal codon model functions in Example 3 - Add comment explaining gappyAAstring internal constant - Add docstrings for core framework functions: combine!, forward!, backward! 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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🤖 Generated with Claude Code