Analysis scripts for the Equine Asthma Cell Atlas project at Molecular Precision Medicine research group, Uppsala University

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

Tools to preprocess gene expression and DNA methylation data for prediction using the ALLIUM classifier.

Stand-alone scripts deployed to Irma

The ALLIUM classifier for predicting Acute Lymphoblastic Leukemia subtype using RNA-seq and DNA methylation data.

A conformal prediction framework implementing conformal risk control, providing statistically guaranteed prediction sets for any classifier.

Conformal prediction for acute lymphoblastic leukemia (ALL) RNA-seq classifiers

This is a Nextflow pipeline for generating sequencing reports for the SNP&Seq Technology platform, NGI Uppsala, SciLifelab Genomics.