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Conects to #316. Site updates for published paper. #325

Merged
merged 14 commits into from
May 1, 2024
Merged

Conects to #316. Site updates for published paper. #325

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f04ddbe
Initial commit of MoTrPAC logo
jimmyzhen Apr 29, 2024
e3efd2d
Add styling for publications page
jimmyzhen Apr 29, 2024
381e516
Fix minor syntax flagged by eslinter
jimmyzhen Apr 29, 2024
5369521
Update homepage above the fold UIs per discussion with David JM
jimmyzhen Apr 29, 2024
ca307a8
Initial commit of static background preloaded for the background video
jimmyzhen Apr 29, 2024
f70bda4
Add static background for display above-the-fold until video backgrou…
jimmyzhen Apr 30, 2024
c07cb8d
Updated styling for all responsive viewport sizes due to UI changes a…
jimmyzhen Apr 30, 2024
0ba3caf
Update CSS selectors for announcement items
jimmyzhen Apr 30, 2024
e5e7fca
Initial commit of link component taking users to data-viz tool
jimmyzhen Apr 30, 2024
5917fb5
Add link buttons to direct users to relevant interactive visualizations
jimmyzhen Apr 30, 2024
4243485
Add link buttons to direct users to relevant interactive visualizatio…
jimmyzhen May 1, 2024
fdf231d
Add published papers in announcements
jimmyzhen May 1, 2024
bb17a5c
Add papers in publication on May 1st
jimmyzhen May 1, 2024
33a3ad9
Merge branch 'dev' of github.com:MoTrPAC/motrpac-frontend into 316_JZ…
jimmyzhen May 1, 2024
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11 changes: 11 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/ADRNL.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisAdrenal() {
// initialize table of contents
Expand Down Expand Up @@ -36,6 +37,11 @@ function GraphicalAnalysisAdrenal() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink
title="trajectory"
tissue="Adrenal"
plotType="Tree"
/>
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -47,6 +53,11 @@ function GraphicalAnalysisAdrenal() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Adrenal"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
11 changes: 11 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/BAT.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisBrownAdipose() {
// initialize table of contents
Expand Down Expand Up @@ -36,6 +37,11 @@ function GraphicalAnalysisBrownAdipose() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink
title="trajectory"
tissue="Brown Adipose"
plotType="Tree"
/>
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -47,6 +53,11 @@ function GraphicalAnalysisBrownAdipose() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Brown Adipose"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
11 changes: 11 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/BLOOD.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisBlood() {
// initialize table of contents
Expand Down Expand Up @@ -35,6 +36,11 @@ function GraphicalAnalysisBlood() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink
title="trajectory"
tissue="Blood RNA"
plotType="Tree"
/>
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -45,6 +51,11 @@ function GraphicalAnalysisBlood() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Blood RNA"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
7 changes: 7 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/COLON.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisColon() {
// initialize table of contents
Expand Down Expand Up @@ -36,6 +37,7 @@ function GraphicalAnalysisColon() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink title="trajectory" tissue="Colon" plotType="Tree" />
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -47,6 +49,11 @@ function GraphicalAnalysisColon() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Colon"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
7 changes: 7 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/CORTEX.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisCortex() {
// initialize table of contents
Expand Down Expand Up @@ -36,6 +37,7 @@ function GraphicalAnalysisCortex() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink title="trajectory" tissue="Cortex" plotType="Tree" />
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -47,6 +49,11 @@ function GraphicalAnalysisCortex() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Cortex"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
7 changes: 7 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/HEART.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisHeart() {
// initialize table of contents
Expand Down Expand Up @@ -36,6 +37,7 @@ function GraphicalAnalysisHeart() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink title="trajectory" tissue="Heart" plotType="Tree" />
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -47,6 +49,11 @@ function GraphicalAnalysisHeart() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Heart"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
11 changes: 11 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/HIPPOC.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisHippocampus() {
// initialize table of contents
Expand Down Expand Up @@ -36,6 +37,11 @@ function GraphicalAnalysisHippocampus() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink
title="trajectory"
tissue="Hippocampus"
plotType="Tree"
/>
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -47,6 +53,11 @@ function GraphicalAnalysisHippocampus() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Hippocampus"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
11 changes: 11 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/HYPOTH.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisHypothalamus() {
// initialize table of contents
Expand Down Expand Up @@ -35,6 +36,11 @@ function GraphicalAnalysisHypothalamus() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink
title="trajectory"
tissue="Hypothalamus"
plotType="Tree"
/>
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -45,6 +51,11 @@ function GraphicalAnalysisHypothalamus() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Hypothalamus"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
7 changes: 7 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/KIDNEY.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisKidney() {
// initialize table of contents
Expand Down Expand Up @@ -35,6 +36,7 @@ function GraphicalAnalysisKidney() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink title="trajectory" tissue="Kidney" plotType="Tree" />
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -45,6 +47,11 @@ function GraphicalAnalysisKidney() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Kidney"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
7 changes: 7 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/LIVER.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisLiver() {
// initialize table of contents
Expand Down Expand Up @@ -35,6 +36,7 @@ function GraphicalAnalysisLiver() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink title="trajectory" tissue="Liver" plotType="Tree" />
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -45,6 +47,11 @@ function GraphicalAnalysisLiver() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Liver"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
3 changes: 3 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/LUNG.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisLung() {
// initialize table of contents
Expand Down Expand Up @@ -35,6 +36,7 @@ function GraphicalAnalysisLung() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink title="trajectory" tissue="Lung" plotType="Tree" />
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -45,6 +47,7 @@ function GraphicalAnalysisLung() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink title="cluster" tissue="Lung" plotType="Histogram" />
</div>
</div>
<div className="section level2">
Expand Down
7 changes: 7 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/PLASMA.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisPlasma() {
// initialize table of contents
Expand Down Expand Up @@ -35,6 +36,7 @@ function GraphicalAnalysisPlasma() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink title="trajectory" tissue="Plasma" plotType="Tree" />
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -45,6 +47,11 @@ function GraphicalAnalysisPlasma() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Plasma"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
11 changes: 11 additions & 0 deletions src/AnalysisPage/GraphicalClustering/Pass1bLandscapeTissues/SKM_GN.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ import {
tocbotConfig,
pass1b06GraphicalClusteringLandscapeImageLocation,
} from '../sharedLib';
import DataVizLink from '../components/dataVizLink';

function GraphicalAnalysisGastrocnemius() {
// initialize table of contents
Expand Down Expand Up @@ -36,6 +37,11 @@ function GraphicalAnalysisGastrocnemius() {
<p>
<img src={`${imageURL}/figure_1.png`} width="100%" alt="" />
</p>
<DataVizLink
title="trajectory"
tissue="Gastrocnemius"
plotType="Tree"
/>
</div>
<div className="section level3">
<h3 id="top-clusters">Top clusters</h3>
Expand All @@ -47,6 +53,11 @@ function GraphicalAnalysisGastrocnemius() {
<p>
<img src={`${imageURL}/figure_2.png`} width="100%" alt="" />
</p>
<DataVizLink
title="cluster"
tissue="Gastrocnemius"
plotType="Histogram"
/>
</div>
</div>
<div className="section level2">
Expand Down
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