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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet Public

    Python 6.6k 1.9k

  2. batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.1k 228

  3. trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 222 20

  4. TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 238 73

  5. basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 145 40

  6. nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 578 105

Repositories

Showing 10 of 86 repositories
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    Python 123 Apache-2.0 12 3 0 Updated Apr 22, 2025
  • nnssl Public
    Python 9 1 0 0 Updated Apr 17, 2025
  • radioactive Public
    Python 3 CC-BY-4.0 1 1 0 Updated Apr 15, 2025
  • ssl3d Public
    3 Apache-2.0 0 0 0 Updated Apr 14, 2025
  • MatchPoint Public

    MatchPoint is a translational image registration framework written in C++. It offers a standardized interface to utilize several registration algorithm resources (like ITK, plastimatch, elastix) easily in a host application.

    C++ 4 2 0 0 Updated Apr 10, 2025
  • LongiSeg Public
    Python 12 Apache-2.0 1 1 0 Updated Apr 9, 2025
  • aorta-aneurysm-assessment Public
    Python 0 0 0 0 Updated Apr 8, 2025
  • LesionLocator Public

    LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.

    Python 24 GPL-3.0 1 2 0 Updated Apr 8, 2025
  • confly Public
    Python 0 Apache-2.0 0 0 0 Updated Apr 4, 2025
  • Longitudinal-Difference-Weighting Public

    Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting

    Python 6 Apache-2.0 0 0 0 Updated Apr 1, 2025
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