CV-WSL-MIS

Exploring CNN and ViT for Weakly-Supervised Medical Image Segmentation

Requirements

• [Pytorch]
• Some basic python packages such as Numpy, Scikit-image, SimpleITK, Scipy ......

Usage

1. Clone the repo:

git clone https://github.com/ziyangwang007/CV-SSL-MIS.git 
cd CV-SSL-MIS

2. Train the model

cd code
python train_XXX.py --root_path ../data/XXX --exp ACDC/XXX --model XXX -max_iterations XXX -batch_size XXX --base_lr XXX --num_classes 4 --labeled_num XXX

3. Test the model

python test_XXX.py -root_path ../data/XXX --exp ACDC/XXX -model XXX --num_classes 4 --labeled_num XXX

You can choose model, dataset, experiment name, iteration number, batch size and etc in your command line, or leave it with default option.

References

Please consider citing the following works, if you use in your research/projects:

TBC

Acknowledgement

This code is mainly borrowed xxx. Some of the other code is based on xxx.