rearange ci #9
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Build & Test | |
on: | |
push: | |
pull_request: | |
release: | |
jobs: | |
install_dependencies: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout MDDriver | |
uses: actions/checkout@v4 | |
with: | |
repository: LBT-CNRS/MDDriver | |
ref: master | |
path: mddriver-source | |
- name: Compile MDDriver | |
run: | | |
cd mddriver-source | |
cmake -S . -B build -DCMAKE_INSTALL_PREFIX=/mddriver | |
cmake --build build | |
sudo cmake --install build | |
- name: Checkout FreeSASA | |
uses: actions/checkout@v4 | |
with: | |
repository: mittinatten/freesasa | |
ref: '2.1.2' | |
path: freesasa-source | |
- name: Compile FreeSASA | |
run: | | |
cd freesasa-source | |
git submodule init | |
git submodule update | |
autoreconf -i | |
./configure --prefix /freesasa --disable-json --disable-xml | |
make -j$(nproc) && sudo make install | |
build_and_test: | |
runs-on: ubuntu-latest | |
needs: install_dependencies | |
steps: | |
- name: Install NetCDF | |
run: | | |
sudo apt install -y libnetcdf-c++4-dev | |
- name: Checkout repository | |
uses: actions/[email protected] | |
- name: Build BioSpring | |
run: | | |
cmake . -B build -DBUILD_TESTS=ON -DMDDRIVER_SUPPORT=ON -DMDDriver_DIR=/mddriver/share/cmake/ \ | |
-DFREESASA_SUPPORT=ON -DFREESASA_PREFIX=/freesasa | |
make -C build -j$(nproc) | |
- name: Test BioSpring | |
run: make -C build test |