Manuscript available on BioRXiv: https://www.biorxiv.org/content/10.1101/780478v1
The organization of this repo is as follows.
requirements.txt contains a list of the python packages used in this code. It can be used to quickly establish a repo with the same version numbers.
V4pyutils.py and V4pyutils_M4.py contain many functions for preprocessing, analysis, and visualization which are called in the notebooks below.
The folder Preprocess data contains, yes, scripts for preprocessing. This includes binning spike times into binned spike rates and concatenating recording sessions.
Finally, all of the figures in the publication were created in the Jupyter notebooks in the create_main_figures folders.
In order to actually run these notebooks, you would to download our data. We have not uploaded our data yet, so please email us with requests.