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Could this software apply to histone modification chip seq data #4

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Treywea opened this issue Oct 16, 2018 · 1 comment
Open

Could this software apply to histone modification chip seq data #4

Treywea opened this issue Oct 16, 2018 · 1 comment

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@Treywea
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Treywea commented Oct 16, 2018

Hi there, thanks a lot for developing a great software that we could use identify the peaks without replicates. I have two different condition's histone modification's data without input control. Could I apply this software to call the true peak among them or I should sequence one more input control library? Looking forward to your comments!

@dabitz
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dabitz commented Apr 1, 2021

I would be happy to know if this tool could be applied for broad peak calling as well? Which parameters? I did run with default parameters and although the narrowpeak is empty, the artifactSummary reports what should be the real broad peaks...

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