- Fig. 1, Supp. Figs 2-3, 6:
million_brain_cells/scanpy_preprocessing.py,million_brain_cells/load_and_save_pcs.R, andmillion_brain_cells/plot_embeddings_parameters.R - Fig. 2, Supp. Fig 7-9
Shekhar/Shekhar_1d.R - Timings:
benchmarks/tsne_benchmarks.m - Accuracy (Supp. Fig. 1):
benchmarks/accuracy_benchmarks.m,accuracy_benchmarks.R - Supp Fig 4:
purified_pbmcs/purified_pbmcs.R - Supp Fig 5:
Hrvatin/hrvatin-tsne.R