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raufs authored May 20, 2024
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codoff is largely adapted from the `compareBGCtoGenomeCodonUsage.py` script in the [*lsa*BGC](https://github.com/Kalan-Lab/lsaBGC) suite and presented here separately just to make it easy to install via bioconda, therefore, please cite:

```
Evolutionary investigations of the biosynthetic diversity in the skin microbiome using lsaBGC
Rauf Salamzade, J.Z. Alex Cheong, Shelby Sandstrom, Mary Hannah Swaney, Reed M. Stubbendieck,
Nicole Lane Starr, Cameron R. Currie, Anne Marie Singh, and Lindsay R. Kalan
```

> [Evolutionary investigations of the biosynthetic diversity in the skin microbiome using *lsa*BGC](https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000988). *Microbial Genomics 2023.* Rauf Salamzade, J.Z. Alex Cheong, Shelby Sandstrom, Mary Hannah Swaney, Reed M. Stubbendieck, Nicole Lane Starr, Cameron R. Currie, Anne Marie Singh, and Lindsay R. Kalan

If you have suggestions or feedback, please let me know in the GitHub issues.

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