build based on bbcf3ed

previews/PR26/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-11-21T19:16:19","documenter_version":"1.8.0"}}
+{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-11-21T20:24:53","documenter_version":"1.8.0"}}

previews/PR26/man/adding_data/index.html

@@ -109,4 +109,4 @@
   16 │         1       16      #undef  false  false      4.5   8.5
   17 │         1       17      #undef  false  false      1.5   6.89062
   18 │         1       18      #undef  false  false      4.5  10.0
-</span><span class="sgr36">                                                         3 rows omitted</span></span></code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../better_edges/">« better edges</a><a class="docs-footer-nextpage" href="../../lib/public/">public »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Thursday 21 November 2024 19:16">Thursday 21 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+</span><span class="sgr36">                                                         3 rows omitted</span></span></code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../better_edges/">« better edges</a><a class="docs-footer-nextpage" href="../../lib/public/">public »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Thursday 21 November 2024 20:24">Thursday 21 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR26/man/better_edges/index.html

@@ -11,4 +11,4 @@
   9 => 5.0
   8 => 3.0
   3 => 3.0
-  1 =&gt; 5.0</code><br/><code class="language-julia-repl hljs" style="display:block;">julia&gt; plot(net1, edgewidth=log_populationsize);</code><code class="nohighlight hljs ansi" style="display:block;"></code><code class="nohighlight hljs ansi" style="display:block;"></code><code class="nohighlight hljs ansi" style="display:block;"></code></pre><p><img src="../../assets/figures/edge_len_example5.svg" alt="example5"/></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../untangling_edges/">« untangling edges</a><a class="docs-footer-nextpage" href="../adding_data/">adding data »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Thursday 21 November 2024 19:16">Thursday 21 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+  1 =&gt; 5.0</code><br/><code class="language-julia-repl hljs" style="display:block;">julia&gt; plot(net1, edgewidth=log_populationsize);</code><code class="nohighlight hljs ansi" style="display:block;"></code><code class="nohighlight hljs ansi" style="display:block;"></code><code class="nohighlight hljs ansi" style="display:block;"></code></pre><p><img src="../../assets/figures/edge_len_example5.svg" alt="example5"/></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../untangling_edges/">« untangling edges</a><a class="docs-footer-nextpage" href="../adding_data/">adding data »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Thursday 21 November 2024 20:24">Thursday 21 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR26/man/getting_started/index.html

@@ -3,4 +3,4 @@
 9 edges
 9 nodes: 4 tips, 1 hybrid nodes, 4 internal tree nodes.
 tip labels: A, B, C, D
-(A,((B,#H1),(C,(D)#H1)));</code></pre><p>and call <code>plot</code>, as shown below.</p><pre><code class="language-julia hljs">plot(net);</code></pre><p><img src="../../assets/figures/gettingstarted.svg" alt="example1"/></p><p>For the function&#39;s full documentation, see here: <a href="../../lib/public/#PhyloPlots.plot-Tuple{HybridNetwork}"><code>plot</code></a>.</p><div class="admonition is-info"><header class="admonition-header">version history</header><div class="admonition-body"><p>Compared to v0.3, v1 does not support the Gadfly-based plots, and uses small-case-only argument names.</p><p>The v0.3 syntax <code>plot(net, :R; ...)</code> still works in v1.0 but is <strong>deprecated</strong>, and will be removed in a future release. For example, you can still use <code>plot(net, :R; showNodeNumber=true)</code>, but you should instead start using <code>plot(net; shownodenumber=true)</code>.</p></div></div></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../installation/">« installation</a><a class="docs-footer-nextpage" href="../untangling_edges/">untangling edges »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Thursday 21 November 2024 19:16">Thursday 21 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+(A,((B,#H1),(C,(D)#H1)));</code></pre><p>and call <code>plot</code>, as shown below.</p><pre><code class="language-julia hljs">plot(net);</code></pre><p><img src="../../assets/figures/gettingstarted.svg" alt="example1"/></p><p>For the function&#39;s full documentation, see here: <a href="../../lib/public/#PhyloPlots.plot-Tuple{HybridNetwork}"><code>plot</code></a>.</p><div class="admonition is-info"><header class="admonition-header">version history</header><div class="admonition-body"><p>Compared to v0.3, v1 does not support the Gadfly-based plots, and uses small-case-only argument names.</p><p>The v0.3 syntax <code>plot(net, :R; ...)</code> still works in v1.0 but is <strong>deprecated</strong>, and will be removed in a future release. For example, you can still use <code>plot(net, :R; showNodeNumber=true)</code>, but you should instead start using <code>plot(net; shownodenumber=true)</code>.</p></div></div></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../installation/">« installation</a><a class="docs-footer-nextpage" href="../untangling_edges/">untangling edges »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Thursday 21 November 2024 20:24">Thursday 21 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>