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Single cell transcriptome multi sample integration analysis

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CellChat_analysis.ipynb		CellChat_analysis.ipynb
README.md		README.md
scMetabolism.ipynb		scMetabolism.ipynb
scRNA_analysis.ipynb		scRNA_analysis.ipynb
subcluster_Trajectory.ipynb		subcluster_Trajectory.ipynb

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scRNA-seq analysis process

Part 1 ：Single cell multi sample integration and cell annotation

Part 2 ：Trajectory analysis for cell subcluster with Monocle2

Part 3 ：CellChat for comparison analysis of multiple datasets

Part 4 ：Metabolism activity analysis with scMetabolism

Part 5 ：Transcription Factors analysis with pySCENIC

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