add long amplicon read simulation code #14
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" # or specify a version | |
| auto-activate-base: true | |
| - name: Create Conda Environment | |
| run: | | |
| conda create -n myenv python=3.8 -y | |
| - name: Install Python dependencies | |
| run: | | |
| conda run -n myenv pip install -r requirements.txt | |
| - name: Install MAFFT | |
| run: | | |
| conda run -n myenv conda install -c bioconda mafft | |
| - name: Verify MAFFT Installation | |
| run: | | |
| conda run -n myenv mafft --version | |
| - name: Run tests | |
| run: | | |
| conda run -n myenv coverage run -m unittest discover -s tests | |
| conda run -n myenv coverage report |