Update obo compliance suite using latest robot (#747)

Using robot prerelease from owlcs/owlapi#1102
INCATools · May 8, 2024 · 137e5ef · 137e5ef
1 parent 393cdb6
commit 137e5ef
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diff --git a/tests/input/obo-compliance/alt_id/alt_id.expected.json b/tests/input/obo-compliance/alt_id/alt_id.expected.json
@@ -37,6 +37,10 @@
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
       "lbl" : "has_obo_format_version",
       "type" : "PROPERTY"
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#id",
+      "lbl" : "id",
+      "type" : "PROPERTY"
     } ]
   } ]
 }
diff --git a/tests/input/obo-compliance/alt_id/alt_id.expected.ofn b/tests/input/obo-compliance/alt_id/alt_id.expected.ofn
@@ -28,6 +28,10 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#has
 
 AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> "has_obo_format_version")
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#id> (id)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#id> "id")
+
 
 
 ############################

diff --git a/tests/input/obo-compliance/alt_id/alt_id.expected.owl b/tests/input/obo-compliance/alt_id/alt_id.expected.owl
@@ -55,7 +55,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#id -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
+        <rdfs:label>id</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -90,5 +92,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 
diff --git a/tests/input/obo-compliance/broad_synonym/broad_synonym.expected.json b/tests/input/obo-compliance/broad_synonym/broad_synonym.expected.json
@@ -25,6 +25,10 @@
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
       "lbl" : "has_obo_format_version",
       "type" : "PROPERTY"
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#id",
+      "lbl" : "id",
+      "type" : "PROPERTY"
     } ]
   } ]
 }
diff --git a/tests/input/obo-compliance/broad_synonym/broad_synonym.expected.ofn b/tests/input/obo-compliance/broad_synonym/broad_synonym.expected.ofn
@@ -26,6 +26,10 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#has
 
 AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> "has_obo_format_version")
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#id> (id)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#id> "id")
+
 
 
 ############################

diff --git a/tests/input/obo-compliance/broad_synonym/broad_synonym.expected.owl b/tests/input/obo-compliance/broad_synonym/broad_synonym.expected.owl
@@ -42,7 +42,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#id -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
+        <rdfs:label>id</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -74,5 +76,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 
diff --git a/tests/input/obo-compliance/comment/comment.expected.json b/tests/input/obo-compliance/comment/comment.expected.json
@@ -11,6 +11,10 @@
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
       "lbl" : "has_obo_format_version",
       "type" : "PROPERTY"
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#id",
+      "lbl" : "id",
+      "type" : "PROPERTY"
     } ]
   } ]
 }
diff --git a/tests/input/obo-compliance/comment/comment.expected.ofn b/tests/input/obo-compliance/comment/comment.expected.ofn
@@ -21,6 +21,10 @@ Declaration(AnnotationProperty(rdfs:comment))
 
 AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> "has_obo_format_version")
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#id> (id)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#id> "id")
+
 
 
 ############################

diff --git a/tests/input/obo-compliance/comment/comment.expected.owl b/tests/input/obo-compliance/comment/comment.expected.owl
@@ -34,7 +34,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#id -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
+        <rdfs:label>id</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -65,5 +67,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 
diff --git a/tests/input/obo-compliance/consider-annotated/consider-annotated.expected.json b/tests/input/obo-compliance/consider-annotated/consider-annotated.expected.json
@@ -13,7 +13,7 @@
       "meta" : {
         "basicPropertyValues" : [ {
           "pred" : "http://www.geneontology.org/formats/oboInOwl#consider",
-          "val" : "X:3"
+          "val" : "http://purl.obolibrary.org/obo/X_3"
         } ],
         "deprecated" : true
       }
@@ -25,6 +25,10 @@
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
       "lbl" : "has_obo_format_version",
       "type" : "PROPERTY"
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#id",
+      "lbl" : "id",
+      "type" : "PROPERTY"
     } ]
   } ]
 }
diff --git a/tests/input/obo-compliance/consider-annotated/consider-annotated.expected.ofn b/tests/input/obo-compliance/consider-annotated/consider-annotated.expected.ofn
@@ -27,6 +27,10 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#con
 
 AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> "has_obo_format_version")
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#id> (id)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#id> "id")
+
 
 
 ############################
@@ -35,7 +39,7 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#has
 
 # Class: <http://purl.obolibrary.org/obo/X_1> (<http://purl.obolibrary.org/obo/X_1>)
 
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "PMID:123470") <http://www.geneontology.org/formats/oboInOwl#consider> <http://purl.obolibrary.org/obo/X_1> "X:3")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "PMID:123470") <http://www.geneontology.org/formats/oboInOwl#consider> <http://purl.obolibrary.org/obo/X_1> <http://purl.obolibrary.org/obo/X_3>)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/X_1> "X:1")
 AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/X_1> "true"^^xsd:boolean)
 

diff --git a/tests/input/obo-compliance/consider-annotated/consider-annotated.expected.owl b/tests/input/obo-compliance/consider-annotated/consider-annotated.expected.owl
@@ -42,7 +42,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#id -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
+        <rdfs:label>id</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -72,19 +74,19 @@
     <!-- http://purl.obolibrary.org/obo/X_1 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/X_1">
-        <oboInOwl:consider>X:3</oboInOwl:consider>
+        <oboInOwl:consider rdf:resource="http://purl.obolibrary.org/obo/X_3"/>
         <oboInOwl:id>X:1</oboInOwl:id>
         <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/X_1"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#consider"/>
-        <owl:annotatedTarget>X:3</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/X_3"/>
         <oboInOwl:source>PMID:123470</oboInOwl:source>
     </owl:Axiom>
 </rdf:RDF>
 
 
 
-<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 
diff --git a/tests/input/obo-compliance/consider/consider.expected.json b/tests/input/obo-compliance/consider/consider.expected.json
@@ -13,7 +13,7 @@
       "meta" : {
         "basicPropertyValues" : [ {
           "pred" : "http://www.geneontology.org/formats/oboInOwl#consider",
-          "val" : "X:3"
+          "val" : "http://purl.obolibrary.org/obo/X_3"
         } ],
         "deprecated" : true
       }
@@ -25,6 +25,10 @@
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
       "lbl" : "has_obo_format_version",
       "type" : "PROPERTY"
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#id",
+      "lbl" : "id",
+      "type" : "PROPERTY"
     } ]
   } ]
 }
diff --git a/tests/input/obo-compliance/consider/consider.expected.ofn b/tests/input/obo-compliance/consider/consider.expected.ofn
@@ -26,6 +26,10 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#con
 
 AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> "has_obo_format_version")
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#id> (id)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#id> "id")
+
 
 
 ############################
@@ -34,7 +38,7 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#has
 
 # Class: <http://purl.obolibrary.org/obo/X_1> (<http://purl.obolibrary.org/obo/X_1>)
 
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#consider> <http://purl.obolibrary.org/obo/X_1> "X:3")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#consider> <http://purl.obolibrary.org/obo/X_1> <http://purl.obolibrary.org/obo/X_3>)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/X_1> "X:1")
 AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/X_1> "true"^^xsd:boolean)
 

diff --git a/tests/input/obo-compliance/consider/consider.expected.owl b/tests/input/obo-compliance/consider/consider.expected.owl
@@ -42,7 +42,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#id -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
+        <rdfs:label>id</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -66,13 +68,13 @@
     <!-- http://purl.obolibrary.org/obo/X_1 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/X_1">
-        <oboInOwl:consider>X:3</oboInOwl:consider>
+        <oboInOwl:consider rdf:resource="http://purl.obolibrary.org/obo/X_3"/>
         <oboInOwl:id>X:1</oboInOwl:id>
         <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
     </owl:Class>
 </rdf:RDF>
 
 
 
-<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 
diff --git a/tests/input/obo-compliance/created_by-annotated/created_by-annotated.expected.json b/tests/input/obo-compliance/created_by-annotated/created_by-annotated.expected.json
@@ -16,10 +16,18 @@
           "val" : "ORCID:1234"
         } ]
       }
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#created_by",
+      "lbl" : "created by",
+      "type" : "PROPERTY"
     }, {
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
       "lbl" : "has_obo_format_version",
       "type" : "PROPERTY"
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#id",
+      "lbl" : "id",
+      "type" : "PROPERTY"
     } ]
   } ]
 }
diff --git a/tests/input/obo-compliance/created_by-annotated/created_by-annotated.expected.ofn b/tests/input/obo-compliance/created_by-annotated/created_by-annotated.expected.ofn
@@ -18,10 +18,18 @@ Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#sou
 #   Annotation Properties
 ############################
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#created_by> (created by)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#created_by> "created by")
+
 # Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> (has_obo_format_version)
 
 AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> "has_obo_format_version")
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#id> (id)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#id> "id")
+
 
 
 ############################

diff --git a/tests/input/obo-compliance/created_by-annotated/created_by-annotated.expected.owl b/tests/input/obo-compliance/created_by-annotated/created_by-annotated.expected.owl
@@ -26,7 +26,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by">
+        <rdfs:label>created by</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -40,7 +42,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#id -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
+        <rdfs:label>id</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -77,5 +81,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 
diff --git a/tests/input/obo-compliance/created_by/created_by.expected.json b/tests/input/obo-compliance/created_by/created_by.expected.json
@@ -16,10 +16,18 @@
           "val" : "username"
         } ]
       }
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#created_by",
+      "lbl" : "created by",
+      "type" : "PROPERTY"
     }, {
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
       "lbl" : "has_obo_format_version",
       "type" : "PROPERTY"
+    }, {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#id",
+      "lbl" : "id",
+      "type" : "PROPERTY"
     } ]
   } ]
 }
diff --git a/tests/input/obo-compliance/created_by/created_by.expected.ofn b/tests/input/obo-compliance/created_by/created_by.expected.ofn
@@ -17,10 +17,18 @@ Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#id>
 #   Annotation Properties
 ############################
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#created_by> (created by)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#created_by> "created by")
+
 # Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> (has_obo_format_version)
 
 AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion> "has_obo_format_version")
 
+# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#id> (id)
+
+AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#id> "id")
+
 
 
 ############################