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HiDiH - Hub for Innovations in Digital Health

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  1. ssam ssam Public archive

    Python 28 11

  2. htslib-js htslib-js Public

    CMake 10 1

  3. PanCanQC PanCanQC Public

    Perl 8 3

  4. YAPSA YAPSA Public

    R 7

  5. sainsc sainsc Public

    Segmentation-free Analysis of In Situ Capture data

    Python 7

  6. SpatialLeiden SpatialLeiden Public

    Implementation of multiplex Leiden for analysis of spatial omics data

    Python 6

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Showing 10 of 37 repositories
  • computational-oncology-group Public
    HTML 1 1 0 0 Updated Mar 22, 2025
  • ovrl.py Public

    A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.

    Python 1 MIT 0 5 1 Updated Mar 19, 2025
  • sonar Public

    Analytic and generative algorithm on co-occurrences in 2d maps

    2 MIT 0 0 0 Updated Mar 16, 2025
  • multiSPAETI Public

    Implementation of MULTISPATI-PCA in Python

    Python 3 MIT 1 1 1 Updated Mar 13, 2025
  • sainsc Public

    Segmentation-free Analysis of In Situ Capture data

    Python 7 MIT 0 1 0 Updated Mar 4, 2025
  • SpatialLeiden Public

    Implementation of multiplex Leiden for analysis of spatial omics data

    Python 6 MIT 0 3 0 Updated Feb 27, 2025
  • sainsc-study Public
    Jupyter Notebook 1 MIT 0 0 0 Updated Feb 18, 2025
  • ovrlpy-publication Public

    figure generator for the ovrlpy QC package for spatial transcriptomics

    1 MIT 0 0 0 Updated Feb 14, 2025
  • umi_alignment Public

    A snakemake pipeline for aligning UMI based WGS data and QC metrics associated with it

    Python 1 MIT 0 7 2 Updated Jan 13, 2025
  • SpatialLeiden-Study Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 25, 2024
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