Search results

Is there a way to pass "--skip-missing-contigs" for whatshap within clair3?

Status: Open.

#418 In HKU-BAL/Clair3;

· Pancreas-Pratik opened on Jan 23, 2026

Docker image for arm64 architecture (Nvidia Jetson AGX Orin)

Status: Open.

#417 In HKU-BAL/Clair3;

· hakobyansiras opened on Jan 12, 2026

Question: Genotype calling for variants inside heterozygous deletion regions

Status: Open.

#416 In HKU-BAL/Clair3;

· windforclouds opened on Jan 7, 2026

Bioconda clair3 install

Status: Open.

#414 In HKU-BAL/Clair3;

· jiali0411 opened on Dec 16, 2025

bacteria model in conda

Status: Open.

#413 In HKU-BAL/Clair3;

· nargesr opened on Dec 2, 2025

Clair3 doesn't report mutations correctly (bacteria)

Status: Open.

#412 In HKU-BAL/Clair3;

· rc-reding opened on Nov 27, 2025

Installation With Conda - LibMambaUnsatisfiableError

Status: Open.

#409 In HKU-BAL/Clair3;

· Ophirkastel opened on Oct 20, 2025

Representation of MNP

enhancementNew feature or requestNew feature or request

Status: Open.

#407 In HKU-BAL/Clair3;

· lisosome opened on Sep 11, 2025

Conda build for macos

enhancementNew feature or requestNew feature or request

Status: Open.

#403 In HKU-BAL/Clair3;

· jodyphelan opened on Aug 16, 2025

Please update samtools used in docker image

enhancementNew feature or requestNew feature or request

Status: Open.

#400 In HKU-BAL/Clair3;

· mp15 opened on Aug 8, 2025

Favor Pileup over Full_alignment when SNP has high QUAL and Full alignment incorrectly assigns as Refcall

enhancementNew feature or requestNew feature or request

Status: Open.

#360 In HKU-BAL/Clair3;

· wshropshire opened on Feb 13, 2025

Better error message when there is no full-alignment output

enhancementNew feature or requestNew feature or request

Status: Open.

#350 In HKU-BAL/Clair3;

· dgslos opened on Dec 17, 2024