maint: use pyproject.toml solely

.pre-commit-config.yaml

@@ -23,11 +23,6 @@ repos:
   hooks:
     - id: rst-backticks
 
-- repo: https://github.com/asottile/setup-cfg-fmt
-  rev: v2.7.0
-  hooks:
-  - id: setup-cfg-fmt
-
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
   rev: v0.8.6

pyproject.toml

@@ -1,25 +1,103 @@
 [build-system]
-requires = ["setuptools>=45", "wheel", "setuptools_scm>=6.2"]
+requires = ["setuptools>=64", "setuptools_scm>=8"]
 build-backend = "setuptools.build_meta"
 
 [tool.setuptools_scm]
 
-[tool.black]
-line-length = 88
-exclude = '''
-/(
-    \.eggs
-  | \.git
-  | \.hg
-  | \.mypy_cache
-  | \.tox
-  | \.venv
-  | _build
-  | buck-out
-  | build
-  | dist
-)/
-'''
+[project]
+name = "hera_sim"
+description = "A collection of simulation routines describing the HERA instrument."
+readme = "README.rst"
+authors = [
+  {name="HERA Team"},
+  {name="Steven Murray", email="[email protected]"}
+]
+license = {text="MIT"}
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Intended Audience :: Science/Research",
+  "License :: OSI Approved",
+  "License :: OSI Approved :: MIT License",
+  "Natural Language :: English",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3 :: Only",
+  "Topic :: Scientific/Engineering :: Astronomy",
+  "Topic :: Scientific/Engineering :: Physics",
+]
+dynamic=["version"]
+requires-python = ">=3.10"
+
+dependencies = [
+  "astropy",
+  "astropy-healpix",
+  "cached-property",
+  "deprecation",
+  "hera-cli-utils>=0.1.0",
+  "numpy>=2",
+  "pyuvdata>=3.1.2",
+  "pyuvsim>=1.4",
+  "pyyaml>=5.1",
+  "rich",
+  "scipy",
+  "typing-extensions;python_version<'3.11'",
+]
+
+[project.optional-dependencies]
+all = [
+  "hera-sim[vis,bda,cal,gpu]",
+]
+bda = [
+  "bda"
+]
+cal = [
+  "hera-calibration>3.6.1"
+]
+dev = [
+  "hera-sim[docs,tests]",
+]
+docs = [
+  "fftvis",
+  "furo",
+  "ipython",
+  "matvis>=1.3.0",
+  "nbsphinx",
+  "numpydoc>=0.8",
+  "pyradiosky>=0.1.2",
+  "sphinx>=1.8,<7.2",
+  "sphinx-autorun",
+]
+tests = [
+  "coverage>=4.5.1",
+  "hera-sim[bda,cal,vis]",
+  "matplotlib>=3.4.2",
+  "pre-commit",
+  "pytest>=3.5.1",
+  "pytest-cov>=2.5.1",
+  "uvtools",
+]
+vis = [
+  "fftvis>=0.1.0",
+  "line-profiler",
+  "matvis>=1.2.1",
+  "mpi4py",
+  "pyradiosky>=0.1.2",
+]
+
+[project.urls]
+Documentation = "https://hera_sim.readthedocs.org"
+Repository = "https://github.com/HERA-Team/hera_sim"
+
+[tool.setuptools]
+script-files = ["scripts/hera-sim-simulate.py", "scripts/hera-sim-vis.py"]
+
+[tool.pytest.ini_options]
+addopts = "--cov hera_sim --cov-config=.coveragerc --cov-report xml:./coverage.xml --durations=25 --verbose"
+norecursedirs = [
+  "dist",
+  "build",
+  ".tox",
+]
+testpaths = "hera_sim/tests"
 
 [tool.ruff]
 line-length = 88
@@ -35,6 +113,7 @@ select = [
   "E",    # pycodestyle
   "W",    # pycodestyle warning
   "NPY",  # numpy-specific rules
+  "I",    # isort
 ]
 
 ignore = [

hera_sim/__yaml_constructors.py → src/hera_sim/__yaml_constructors.py

@@ -4,9 +4,10 @@
 This may need to be updated if the :mod:`.interpolators` module is updated.
 """
 
-import astropy.units as u
 import inspect
 import warnings
+
+import astropy.units as u
 import yaml
 
 from . import antpos, interpolators

hera_sim/adjustment.py → src/hera_sim/adjustment.py

@@ -1,13 +1,14 @@
 """Module providing tools for adjusting simulation data/metadata to a reference."""
 
 import logging
-import numpy as np
 import os
 import pathlib
+from warnings import warn
+
+import numpy as np
 from pyuvdata import UVData
 from pyuvdata.utils import polnum2str
 from scipy.interpolate import RectBivariateSpline, interp1d
-from warnings import warn
 
 from .simulate import Simulator
 from .utils import _listify

hera_sim/beams.py → src/hera_sim/beams.py

@@ -1,11 +1,14 @@
 """Module defining analytic polynomial beams."""
 
+from dataclasses import dataclass, field
+
 import numpy as np
+import numpy.typing as npt
 from numpy.polynomial.chebyshev import chebval
 from pyuvdata.analytic_beam import AnalyticBeam
-from dataclasses import dataclass, field
+
 from . import utils
-import numpy.typing as npt
+
 try:
     from typing import Self
 except ImportError:

hera_sim/cli_utils.py → src/hera_sim/cli_utils.py

@@ -3,9 +3,10 @@
 from __future__ import annotations
 
 import itertools
-import numpy as np
 import os
 import warnings
+
+import numpy as np
 from pyuvdata import UVData
 
 from .defaults import SEASON_CONFIGS

hera_sim/data/tutorials_data/end_to_end/make_mock_catalog.py → src/hera_sim/data/tutorials_data/end_to_end/make_mock_catalog.py

@@ -1,6 +1,7 @@
 """Script for making a mock point source catalog."""
 
 import argparse
+
 import numpy as np
 from astropy import units
 from astropy.coordinates import EarthLocation, Latitude, Longitude

hera_sim/defaults.py → src/hera_sim/defaults.py

@@ -3,9 +3,10 @@
 import functools
 import inspect
 import warnings
-import yaml
 from os import path
 
+import yaml
+
 from .config import CONFIG_PATH
 
 SEASON_CONFIGS = {