Global Pneumococcal Sequencing (GPS) Project
A worldwide genomic survey of the impact of vaccination on the pathogen population
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- gps-pipeline Public
Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)
GlobalPneumoSeq/gps-pipeline’s past year of commit activity - gpsc-reference-genomes Public
The reference genomes for common Global Pneumococcal Sequence Clusters (GPSCs)
GlobalPneumoSeq/gpsc-reference-genomes’s past year of commit activity - cps_extractor Public
NextFlow pipeline which extracts capsular locus sequences (CPS) and checks for disruptive mutations
GlobalPneumoSeq/cps_extractor’s past year of commit activity - spn-pbp-amr Public Forked from pathogenwatch-oss/spn-resistance-pbp
PBP resistance assignment for Streptococcus pneumoniae
GlobalPneumoSeq/spn-pbp-amr’s past year of commit activity
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