Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Shade the "intron" skips in RNA-seq reads according to XS/TS/ts tag #4673

Open
cmdcolin opened this issue Nov 19, 2024 · 1 comment
Open
Labels
enhancement New feature or request

Comments

@cmdcolin
Copy link
Collaborator

The arcs on the SNPCoverage track are already default colored according to these tags, could also color the intron skips in the read pileup also. this would reveal which reads are contributing to a particular strand or splice pattern (helps especially if there are reads from a reverse strand and forward strand gene overlapping)

@cmdcolin cmdcolin added the enhancement New feature or request label Nov 19, 2024
@cmdcolin
Copy link
Collaborator Author

there is another possible subtext which is: making this the default coloring when RNA-seq is detecting. currently the default coloring is just the "grey boxes" but it could be that the coloration of strand is a good default if it is 'detected to be RNA-seq'

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant