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@FrietzeLabUVM

Frietze Lab @ UVM

Bioinformatics software, scripts, and analysis projects developed by the Frietze Lab

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  1. ssvQC Public

    R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.

    R 5

  2. peaksat Public

    R package to do peak saturation analysis for ChIP-seq.

    R 1 1

Repositories

Showing 10 of 18 repositories
  • chiptsne2 Public

    General ChIPseq and epigenetic-seq workflow R package with support for t-SNE and UMAP to discover combinatorial epigenetic patterns.

    R 0 0 0 0 Updated Jan 24, 2025
  • ssvQC Public

    R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.

    R 5 0 5 0 Updated Jan 15, 2025
  • TAP Public

    Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.

    Shell 1 Apache-2.0 0 1 0 Updated Dec 3, 2024
  • peaksat Public

    R package to do peak saturation analysis for ChIP-seq.

    R 1 1 1 0 Updated Sep 30, 2024
  • TAPhelpR Public

    R package to help with TAP pipeline outputs

    R 0 0 0 0 Updated Sep 19, 2024
  • chiptsne Public

    Apply tSNE for analysis of ChIPseq and related dataset

    R 0 MIT 0 0 0 Updated Apr 21, 2023
  • EIDA_core_resources Public

    Scripts and other computational resources for the EIDA core

    0 MIT 0 0 0 Updated Jun 27, 2022
  • BRD_PPIN Public
    R 1 MIT 0 0 0 Updated Nov 29, 2021
  • easyGO Public

    Make it easier to with GO terms in R.

    R 0 0 0 0 Updated Nov 9, 2021
  • ATACseq Public Forked from tobiasrausch/ATACseq

    Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

    Shell 0 GPL-3.0 36 0 0 Updated Sep 14, 2021
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