Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update VEP install doc for new options (114) #844

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Update VEP install doc for new options (114) #844

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 11 additions & 1 deletion docs/htdocs/info/docs/tools/vep/script/vep_download.html
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1205,7 +1205,7 @@ <h3 id="run_install">Running the installer</h2>
<tr id="opt_prefer_bin">
<td><pre>--PREFER_BIN</pre></td>
<td><pre>-p</pre></td>
<td>Use this if the installer fails with out of memory errors.</td>
<td>Use this if the installer fails with "out of memory" errors.</td>
</tr>
<tr id="opt_species">
<td><pre>--SPECIES</pre></td>
Expand All @@ -1221,6 +1221,16 @@ <h3 id="run_install">Running the installer</h2>
<p>Use <code>all</code> to install data for all available species.</p>
</td>
</tr>
<tr id="opt_use_https_proto">
<td><pre>--USE_HTTPS_PROTO</pre></td>
<td><pre></pre></td>
<td>Download cache and FASTA file using HTTPs protocol instead of FTP. Useful for networks where FTP port is blocked by firewall.</td>
</tr>
<tr id="opt_github_token">
<td><pre>--GITHUBTOKEN</pre></td>
<td><pre></pre></td>
<td>Set token to use for authentication when querying GitHub API. Authenticated user have increased rate-limit. PLEASE NOTE: use token with read-only access.</td>
</tr>
<tr id="opt_quiet">
<td><pre>--QUIET</pre></td>
<td><pre>-q</pre></td>
Expand Down