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Export VEP plugins
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nuno-agostinho committed Aug 20, 2024
1 parent 4a25f6f commit 1eeb20f
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2 changes: 1 addition & 1 deletion docker/Dockerfile
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Expand Up @@ -110,7 +110,7 @@ RUN apt-get update && apt-get -y install \
# Setup VEP environment
ENV OPT=/opt/vep
ENV OPT_SRC=$OPT/src
ENV PERL5LIB_TMP=$PERL5LIB:$OPT_SRC/ensembl-vep:$OPT_SRC/ensembl-vep/modules
ENV PERL5LIB_TMP=$PERL5LIB:$OPT_SRC/ensembl-vep:$OPT_SRC/ensembl-vep/modules:/plugins
ENV PERL5LIB=$PERL5LIB_TMP:$OPT_SRC/bioperl-live
ENV KENT_SRC=$OPT/src/kent-335_base/src
ENV HTSLIB_DIR=$OPT_SRC/htslib
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