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HGVSc for RefSeq transcripts - represent the alleles relative to the feature #1128

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dglemos
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@dglemos dglemos commented Oct 29, 2024

In this PR https://github.com/Ensembl/ensembl-variation/pull/1103/files the HGVSc was updated to reflect the alleles used in the annotation after a refseq editing.
Original ticket: https://www.ebi.ac.uk/panda/jira/browse/ENSVAR-4493

This PR fixes the alleles to be represented relative to the transcript.
It also fixes one of the issues reported here Ensembl/ensembl-vep#1775

@likhitha-surapaneni likhitha-surapaneni self-assigned this Oct 29, 2024
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Works as expected for HGVSc terms, thanks @dglemos

@likhitha-surapaneni likhitha-surapaneni merged commit 4c6c222 into Ensembl:postreleasefix/114 Nov 5, 2024
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Merged to main, release/114 ad cherry-picked to release/113

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2 participants