HGVSc for RefSeq transcripts - represent the alleles relative to the feature #1128
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
In this PR https://github.com/Ensembl/ensembl-variation/pull/1103/files the HGVSc was updated to reflect the alleles used in the annotation after a refseq editing.
Original ticket: https://www.ebi.ac.uk/panda/jira/browse/ENSVAR-4493
This PR fixes the alleles to be represented relative to the transcript.
It also fixes one of the issues reported here Ensembl/ensembl-vep#1775