Do not prepare mesh by default for p-elements before splitting. #581
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| name: build-macos-homebrew | |
| on: | |
| workflow_dispatch: | |
| push: | |
| paths-ignore: | |
| - '**.nix' | |
| - 'flake.lock' | |
| pull_request: | |
| paths-ignore: | |
| - '**.nix' | |
| - 'flake.lock' | |
| concurrency: ci-macos-homebrew-${{ github.ref }} | |
| jobs: | |
| macos-homebrew: | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} (${{ matrix.openmp }} OpenMP) | |
| strategy: | |
| # Allow other runners in the matrix to continue if some fail | |
| fail-fast: false | |
| matrix: | |
| os: [macos-14] | |
| openmp: [without] | |
| # Building with OpenMP causes some test failures on macOS on Apple | |
| # Silicon. | |
| # The affected tests currently are: H1BasisEvaluation and | |
| # SD_H1BasisEvaluation. | |
| # For the time being, disable building with OpenMP in CI on Apple | |
| # Silicon. | |
| # OpenMP is also needed as a transitional build dependency of the | |
| # SuiteSparse package from Homebrew. | |
| # FIXME: Consider building with OpenMP again when this (potentially | |
| # upstream) issue has been fixed. | |
| include: | |
| - os: macos-13 | |
| openmp: with | |
| steps: | |
| - name: get CPU information | |
| run: | | |
| sysctl hw | |
| sysctl machdep | |
| - name: checkout repository | |
| uses: actions/checkout@v4 | |
| - name: install dependencies | |
| # Homebrew's Python conflicts with the Python that comes pre-installed | |
| # on the GitHub runners. Some of the dependencies depend on different | |
| # versions of Homebrew's Python. Enforce using the ones from Homebrew | |
| # to avoid errors on updates. | |
| # See: https://github.com/orgs/Homebrew/discussions/3928 | |
| # It looks like "gfortran" isn't working correctly unless "gcc" is | |
| # re-installed. | |
| run: | | |
| brew update | |
| brew install --overwrite [email protected] [email protected] | |
| brew reinstall gcc | |
| brew install \ | |
| cmake openblas open-mpi \ | |
| ${{ matrix.openmp == 'with' && 'libomp suitesparse' || '' }} \ | |
| qwt vtk opencascade | |
| echo "HOMEBREW_PREFIX=$(brew --prefix)" >> $GITHUB_ENV | |
| - name: configure | |
| env: | |
| LDFLAGS: ${{ matrix.openmp == 'with' && format('-L{0}/opt/libomp/lib -lomp', env.HOMEBREW_PREFIX) || '' }} | |
| # The tests `SD_H1BasisEvaluation` and `SD_LinearFormsAssembly` are | |
| # failing on macos-13 (Intel CPU) at optimization level `-O3`. | |
| # They are passing if ElmerFEM is built with optimization level `-O2`. | |
| run: | | |
| mkdir ${GITHUB_WORKSPACE}/build | |
| cd ${GITHUB_WORKSPACE}/build | |
| cmake \ | |
| -DCMAKE_BUILD_TYPE=${{ matrix.os == 'macos-13' && 'RelWithDebInfo' || 'Release' }} \ | |
| -DCMAKE_C_COMPILER=clang \ | |
| -DCMAKE_CXX_COMPILER=clang++ \ | |
| -DCMAKE_Fortran_COMPILER=gfortran \ | |
| -DCMAKE_INSTALL_PREFIX="${GITHUB_WORKSPACE}/usr" \ | |
| -DBLA_VENDOR="OpenBLAS" \ | |
| -DCMAKE_PREFIX_PATH="$( [ "${{ matrix.openmp }}" == "with" ] && echo "${HOMEBREW_PREFIX}/opt/libomp;")${HOMEBREW_PREFIX}/opt/openblas;${HOMEBREW_PREFIX}/opt/qt;${HOMEBREW_PREFIX}/opt/qwt" \ | |
| ${{ matrix.openmp == 'with' | |
| && '-DWITH_OpenMP=ON \ | |
| -DOpenMP_C_FLAGS="-Xclang -fopenmp -I${HOMEBREW_PREFIX}/opt/libomp/include" \ | |
| -DOpenMP_CXX_FLAGS="-Xclang -fopenmp -I${HOMEBREW_PREFIX}/opt/libomp/include" \ | |
| -DOpenMP_Fortran_FLAGS="-fopenmp -I${HOMEBREW_PREFIX}/opt/libomp/include"' | |
| || '-DWITH_OpenMP=OFF' }} \ | |
| -DWITH_LUA=ON \ | |
| -DWITH_MPI=ON \ | |
| -DMPI_TEST_MAXPROC=2 \ | |
| -DWITH_Zoltan=OFF \ | |
| -DWITH_Mumps=OFF \ | |
| -DWITH_CHOLMOD=${{ matrix.openmp == 'with' && 'ON' || 'OFF' }} \ | |
| -DWITH_ElmerIce=ON \ | |
| -DWITH_ELMERGUI=ON \ | |
| -DWITH_QT6=ON \ | |
| -DQWT_INCLUDE_DIR="${HOMEBREW_PREFIX}/opt/qwt/lib/qwt.framework/Headers" \ | |
| -DWITH_VTK=ON \ | |
| -DWITH_OCC=ON \ | |
| -DWITH_MATC=ON \ | |
| -DWITH_PARAVIEW=ON \ | |
| -DCREATE_PKGCONFIG_FILE=ON \ | |
| .. | |
| - name: build | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| cmake --build . -j$(sysctl -n hw.logicalcpu) | |
| - name: install | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| cmake --install . | |
| - name: check | |
| id: run-ctest | |
| timeout-minutes: 150 | |
| env: | |
| CTEST_OUTPUT_ON_FAILURE: 1 | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| ctest . \ | |
| -LE slow \ | |
| -j$(sysctl -n hw.logicalcpu) \ | |
| --timeout 300 | |
| - name: re-run tests | |
| if: always() && (steps.run-ctest.outcome == 'failure') | |
| timeout-minutes: 60 | |
| env: | |
| CTEST_OUTPUT_ON_FAILURE: 1 | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| # get names of failed tests and strip potential "_np*" suffix | |
| failed_tests=($(ctest . -N --rerun-failed | grep -E "Test\s+#.*" | awk '{print $3}' | sed -e 's/_np[0-9]*$//g')) | |
| # remove duplicate test names | |
| unique_failed_tests=($(echo "${failed_tests[@]}" | tr ' ' '\n' | sort -u | tr '\n' ' ')) | |
| for test in "${unique_failed_tests[@]}"; do | |
| # check if test is from fem or ElmerIce | |
| if [ -d fem/tests/${test} ]; then | |
| test_root=fem/tests | |
| else | |
| test_root=elmerice/Tests | |
| fi | |
| echo "::group::Content of ${test_root}/${test}" | |
| echo ---- Files ---- | |
| ls -Rl ${test_root}/${test} | |
| if [ -f ${test_root}/${test}/test-stderr*.log ]; then | |
| err_logs=($(ls ${test_root}/${test}/test-stderr*.log)) | |
| for err_log in "${err_logs[@]}"; do | |
| echo ---- Content of ${err_log} ---- | |
| cat ${err_log} | |
| done | |
| fi | |
| if [ -f ${test_root}/${test}/test-stdout*.log ]; then | |
| out_logs=($(ls ${test_root}/${test}/test-stdout*.log)) | |
| for out_log in "${out_logs[@]}"; do | |
| echo ---- Content of ${out_log} ---- | |
| cat ${out_log} | |
| done | |
| fi | |
| echo "::endgroup::" | |
| done | |
| echo "::group::Re-run failing tests" | |
| ctest --rerun-failed --output-on-failure --timeout 180 || true | |
| echo "::endgroup::" | |
| echo "::group::Log from these tests" | |
| [ ! -f Testing/Temporary/LastTest.log ] || cat Testing/Temporary/LastTest.log | |
| echo "::endgroup::" |