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A QIIME 2 plugin for interaction with the Greengenes2 database
Emperor a tool for the analysis and visualization of large microbial ecology datasets
A package for creating and managing sample identifiers in comparative -omics datasets.
Automatic identification of kiwi calls from audio recordings
Phylogenetic Organization of Metagenomic Signals (POMS)
Regularized kernel canonical correlation analysis in Python
The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.
An R package for learning log-ratio biomarkers from high-throughput sequencing data.
Anomaly detection related books, papers, videos, and toolboxes
Neutral evolution modeling of microbes.
Build a partitioned pangenome graph from microbial genomes
Fast multi-line FASTA/Q reader in several programming languages
Sensitivity Analysis Library in Python. Contains Sobol, Morris, FAST, and other methods.
Setting an objective minimum read count threshold for low biomass 16S rRNA gene amplicon sequencing data using serially diluted mock communities
This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
Keep track on time used on tasks in different projects
R package for color themes inspired by national parks
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA