LAMMPS small build with OBMD easyconfig template with `software-commit` #6

laraPPr · 2024-10-14T15:03:40Z

No description provided.

dev-eessi-io-bot · 2024-10-14T15:03:46Z

Instance dev.eessi.io-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen2
repositories: dev.eessi.io

laraPPr · 2024-10-14T15:04:56Z

bot: build

dev-eessi-io-bot · 2024-10-14T15:05:00Z

Updates by the bot instance dev.eessi.io-bot-mc-azure (click for details)

received bot command build from laraPPr
- expanded format: build
handling command build resulted in:
- submitted job 92, for details & status see LAMMPS small build with OBMD easyconfig template with software-commit #6 (comment)

dev-eessi-io-bot · 2024-10-14T15:05:03Z

New job on instance dev.eessi.io-bot-mc-azure for architecture x86_64-amd-zen2 for repository dev.eessi.io in job dir /project/def-users/SHARED/jobs/2024.10/pr_6/92

date	job status	comment
Oct 14 15:05:02 UTC 2024	submitted	job id `92` awaits release by job manager
Oct 14 15:05:43 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 14 15:11:46 UTC 2024	running	job `92` is running
Oct 14 15:13:49 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-92.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1728918765.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen2/software no software packages in tarball other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Oct 14 15:13:49 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job92.test` does not exist in job directory or reading it failed.

Neves-P · 2024-10-14T15:16:29Z

It looks like it errored while translating the LAMMPS version on the easyblock. ~~I'll check if it used the easyblock filewe're expecting (as given via the commit in the easystack)~~ it did:
== easyblock lammps.py included from commit c60c7c824468aab2d0255521db1813e4ba62c845

  >>  * PCRE/8.45-GCCcore-12.3.0
  >>  * libxml2/2.11.4-GCCcore-12.3.0
  >>  * FFmpeg/6.0-GCCcore-12.3.0
  >>  * Voro++/0.4.6-GCCcore-12.3.0
  >>  * kim-api/2.3.0-GCC-12.3.0
  >>  * Eigen/3.4.0-GCCcore-12.3.0
  >>  * PLUMED/2.9.0-foss-2023a
  >>  * SciPy-bundle/2023.07-gfbf-2023a
  >>  * VTK/9.3.0-foss-2023a
  >>  * MDI/1.4.26-gompi-2023a
  >>  * tbb/2021.11.0-GCCcore-12.3.0
  >>  * ScaFaCoS/1.0.4-foss-2023a
  >> defining build environment for foss/2023a toolchain
== ... (took 11 secs)
ERROR: Traceback (most recent call last):
  File "/tmp/eb-riopifj7/eb-o7vwvy1c/included-easyblocks-7oztf6r9/easybuild/easyblocks/lammps.py", line 177, in translate_lammps_version
    return '.'.join([items[2], month_map[items[1].upper()], '%02d' % int(items[0])])
                               ~~~~~~~~~^^^^^^^^^^^^^^^^^^
KeyError: 'C'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen2/software/EasyBuild/4.9.4/lib/python3.11/site-packages/easybuild/main.py", line 137, in build_and_install_software
    (ec_res['success'], app_log, err) = build_and_install_one(ec, init_env)
                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen2/software/EasyBuild/4.9.4/lib/python3.11/site-packages/easybuild/framework/easyblock.py", line 4276, in build_and_install_one
    result = app.run_all_steps(run_test_cases=run_test_cases)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen2/software/EasyBuild/4.9.4/lib/python3.11/site-packages/easybuild/framework/easyblock.py", line 4155, in run_all_steps
    self.run_step(step_name, step_methods)
  File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen2/software/EasyBuild/4.9.4/lib/python3.11/site-packages/easybuild/framework/easyblock.py", line 3990, in run_step
    step_method(self)()
  File "/tmp/eb-riopifj7/eb-o7vwvy1c/included-easyblocks-7oztf6r9/easybuild/easyblocks/lammps.py", line 236, in prepare_step
    self.cur_version = translate_lammps_version(self.version, path=self.start_dir)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/eb-riopifj7/eb-o7vwvy1c/included-easyblocks-7oztf6r9/easybuild/easyblocks/lammps.py", line 188, in translate_lammps_version
    return '.'.join([items[2], month_map[items[1].upper()], '%02d' % int(items[0])])
                               ~~~~~~~~~^^^^^^^^^^^^^^^^^^
KeyError: ' '

edit: added more context from the log

laraPPr · 2024-10-14T15:30:59Z

Ah I think I know what the cause is

laraPPr · 2024-10-14T16:04:27Z

bot: build

dev-eessi-io-bot · 2024-10-14T16:04:30Z

Updates by the bot instance dev.eessi.io-bot-mc-azure (click for details)

received bot command build from laraPPr
- expanded format: build
handling command build resulted in:
- submitted job 93, for details & status see LAMMPS small build with OBMD easyconfig template with software-commit #6 (comment)

dev-eessi-io-bot · 2024-10-14T16:04:33Z

New job on instance dev.eessi.io-bot-mc-azure for architecture x86_64-amd-zen2 for repository dev.eessi.io in job dir /project/def-users/SHARED/jobs/2024.10/pr_6/93

date	job status	comment
Oct 14 16:04:32 UTC 2024	submitted	job id `93` awaits release by job manager
Oct 14 16:04:57 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 14 16:05:59 UTC 2024	running	job `93` is running
Oct 14 16:12:07 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-93.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1728922230.tar.gz` size: 116 MiB (121913550 bytes) entries: 4812 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `LAMMPS/570c9d190fee556c62e5bd0a9c6797c4dffcc271-foss-2023a-kokkos-dev_OBMD.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `LAMMPS/570c9d190fee556c62e5bd0a9c6797c4dffcc271-foss-2023a-kokkos-dev_OBMD` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Oct 14 16:12:07 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job93.test` does not exist in job directory or reading it failed.
Oct 15 08:35:46 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1728922230.tar.gz` to S3 bucket succeeded

laraPPr · 2024-10-15T08:20:55Z

@Neves-P will you deploy it or not yet?

LAMMPS small build with OBMD

ca9f2dd

laraPPr changed the title ~~LAMMPS small build with OBMD~~ LAMMPS small build with OBMD easyconfig template with software-commit Oct 14, 2024

update commit of easyBlock

adac5ec

Neves-P added the bot:deploy Ask bot to deploy missing software installations to dev.eessi.io label Oct 15, 2024

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LAMMPS small build with OBMD easyconfig template with `software-commit` #6

LAMMPS small build with OBMD easyconfig template with `software-commit` #6

laraPPr commented Oct 14, 2024

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laraPPr commented Oct 15, 2024

LAMMPS small build with OBMD easyconfig template with software-commit #6

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LAMMPS small build with OBMD easyconfig template with software-commit #6

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LAMMPS small build with OBMD easyconfig template with `software-commit` #6

LAMMPS small build with OBMD easyconfig template with `software-commit` #6

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