In this guide we will deploy a DigitalOcean Managed Kubernetes cluster, create two Node Pools, one for our standard applications and one dedicated to our Rook / Ceph storage nodes. We'll then deploy a Rook / Ceph cluster and give some working examples of consuming RWO Block and RWX Filesystem storage.
Rook is an open source cloud-native storage orchestrator, providing the platform, framework, and support for Ceph storage to natively integrate with cloud-native environments.
Ceph is a distributed storage system that provides file, block and object storage and is deployed in large scale production clusters.
Rook automates deployment and management of Ceph to provide self-managing, self-scaling, and self-healing storage services. The Rook operator does this by building on Kubernetes resources to deploy, configure, provision, scale, upgrade, and monitor Ceph.
The Ceph operator was declared stable in December 2018 in the Rook v0.9 release, providing a production storage platform for many years. Rook is hosted by the Cloud Native Computing Foundation (CNCF) as a graduated level project.
DigitalOcean Kubernetes (DOKS) is a managed Kubernetes service that lets you deploy Kubernetes clusters without the complexities of handling the control plane and containerized infrastructure. Clusters are compatible with standard Kubernetes toolchains and integrate natively with DigitalOcean Load Balancers and volumes.
Import: https://docs.digitalocean.com/products/kubernetes/how-to/create-clusters/
To create a Kubernetes cluster via the command-line, follow these steps:
-
InstallÂ
doctl, the DigitalOcean command-line tool. -
Create a personal access token, and save it for use withÂ
doctl. -
Use the token to grantÂ
doctl access to your DigitalOcean account.doctl auth init -
Finally, create a Kubernetes cluster withÂ
doctl kubernetes cluster create.doctl kubernetes cluster create doks-shark-1 --auto-upgrade=true --ha=true --node-pool="name=pool-apps;size=s-4vcpu-8gb-amd;count=3" --region=lon1 --surge-upgrade=true
doks-shark-1is our cluster name- We are creating one node pools, 1x for our regular workloads and in the next step we will create 1x dedicated to our storage nodes.
- The region is London, surge-upgrades are enabled, HA is enabled, auto-upgrade is enabled.
- You'll want to read the usage docs for more details
- Grab our DOKS cluster ID
doctl kubernetes cluster list
ID Name Region Version Auto Upgrade Status Node Pools
35eabc79-a6a0-4559-8857-38ed09630bfc doks-shark-1 lon1 1.26.3-do.0 true running pool-apps pool-storage
- Create our new node pool
doctl kubernetes cluster node-pool create 35eabc79-a6a0-4559-8857-38ed09630bfc --count 3 --name pool-storage --size s-4vcpu-8gb-amd --taint storage-node=true:NoSchedule
- We add taints to our storage nodes to make sure that no pods will be scheduled on this node pool as long as we explicitly tolerate it. These nodes are exclusively for Rook / Ceph OSD storage pods.
Let’s start installing Rook by cloning the repository from GitHub. We'll use a combination of the examples provided in this repo and examples below.
git clone https://github.com/jkpedo/rook.git
git checkout doks
kubectl create -f deploy/examples/crds.yaml -f deploy/examples/common.yaml
kubectl create -f deploy/examples/operator.yaml
# verify the rook-ceph-operator is in the `Running` state before proceeding
kubectl get pods -n rook-ceph -l app=rook-ceph-operator
To watch the operator you can tail its logs
kubectl logs -n rook-ceph -f -l app=rook-ceph-operator
In this example, we will leverage the do-block-storage StorageClass that will be used to request DigitalOcean Volumes which will in turn be dynamically attached to our storage nodes.
kubectl create -f deploy/examples/cluster-on-pvc-doks.yaml
After a few minutes, you will see some pods running in the rook-ceph namespace. You should be able to see the following pods once they are all running. The number of osd pods will depend on the number of nodes in the cluster and the number of devices configured. It is expected that one OSD will be created per node.
kubectl -n rook-ceph get pods
NAME READY STATUS RESTARTS AGE
csi-cephfsplugin-provisioner-d77bb49c6-n5tgs 5/5 Running 0 140s
csi-cephfsplugin-provisioner-d77bb49c6-v9rvn 5/5 Running 0 140s
csi-cephfsplugin-rthrp 3/3 Running 0 140s
csi-rbdplugin-hbsm7 3/3 Running 0 140s
csi-rbdplugin-provisioner-5b5cd64fd-nvk6c 6/6 Running 0 140s
csi-rbdplugin-provisioner-5b5cd64fd-q7bxl 6/6 Running 0 140s
rook-ceph-crashcollector-minikube-5b57b7c5d4-hfldl 1/1 Running 0 105s
rook-ceph-mgr-a-64cd7cdf54-j8b5p 1/1 Running 0 77s
rook-ceph-mon-a-694bb7987d-fp9w7 1/1 Running 0 105s
rook-ceph-mon-b-856fdd5cb9-5h2qk 1/1 Running 0 94s
rook-ceph-mon-c-57545897fc-j576h 1/1 Running 0 85s
rook-ceph-operator-85f5b946bd-s8grz 1/1 Running 0 92m
rook-ceph-osd-0-6bb747b6c5-lnvb6 1/1 Running 0 23s
rook-ceph-osd-1-7f67f9646d-44p7v 1/1 Running 0 24s
rook-ceph-osd-2-6cd4b776ff-v4d68 1/1 Running 0 25s
rook-ceph-osd-prepare-node1-vx2rz 0/2 Completed 0 60s
rook-ceph-osd-prepare-node2-ab3fd 0/2 Completed 0 60s
rook-ceph-osd-prepare-node3-w4xyz 0/2 Completed 0 60s
You can get or describe the status of your cephcluster in two ways:
kubectl get cephclusters.ceph.rook.io -n rook-ceph
NAME DATADIRHOSTPATH MONCOUNT AGE PHASE MESSAGE HEALTH EXTERNAL FSID
rook-ceph /var/lib/rook 3 96m Ready Cluster created successfully HEALTH_OK e29bbbb1-0abb-4f3d-812c-3527f9e3bfdd
Or, to verify that the cluster is in a healthy state, connect to the Rook toolbox and run the ceph status command.
Launch the rook-ceph-tools pod:
kubectl create -f deploy/examples/toolbox.yaml
Once the rook-ceph-tools pod is running, you can connect to it with:
kubectl -n rook-ceph exec -it deploy/rook-ceph-tools -- bash
All available tools in the toolbox are ready for your troubleshooting needs.
Example:
ceph status
ceph osd status
ceph df
rados df
Ceph has a dashboard in which you can view the status of your cluster.
kubectl -n rook-ceph port-forward svc/rook-ceph-mgr-dashboard 8443:8443
The default username is admin, to set your own password:
kubectl -n rook-ceph exec -it deploy/rook-ceph-tools -- bash
echo 'your-password-here' > /tmp/test
ceph dashboard ac-user-create admin -i /tmp/test administrator
To increase the space available to your Rook / Ceph cluster simply:
kubectl -n rook-ceph edit CephCluster rook-ceph
Modify
storage:
storageClassDeviceSets:
- name: set1
volumeClaimTemplates:
- metadata:
name: data
spec:
resources:
requests:
storage: 100Gi
storageClassName: do-block-storage
volumeMode: Block
accessModes:
- ReadWriteOnceRook can expose three different types of storage to your Kubernetes cluster for consumption by your workloads. They are:
- Block: Create block storage to be consumed by a pod (RWO)
- Shared Filesystem: Create a filesystem to be shared across multiple pods (RWX)
- Object: Create an object store that is accessible inside or outside the Kubernetes cluster
For the purposes of this guide we will deploy Block (RWO) and Shared (RWX) storage.
Block storage allows a single pod to mount storage (RWO)
Before Rook can provision storage, a StorageClass and CephBlockPool CRD need to be created. This will allow Kubernetes to interoperate with Rook when provisioning persistent volumes.
kubectl create -f deploy/examples/csi/rbd/storageclass-doks.yaml
A filesystem storage (also named shared filesystem) can be mounted with read/write permission from multiple pods. This may be useful for applications which can be clustered using a shared filesystem.
In this example we create the metadata pool with replication of three and a single data pool with replication of three. For more options, see the documentation on creating shared filesystems.
kubectl create -f deploy/examples/filesystem-doks.yaml
To confirm the filesystem is configured, wait for the mds pods to start:
kubectl -n rook-ceph get pod -l app=rook-ceph-mds
NAME READY STATUS RESTARTS AGE
rook-ceph-mds-myfs-a-57b8fbb74d-h8mhl 2/2 Running 0 108m
rook-ceph-mds-myfs-b-644bfd856f-c99x4 2/2 Running 0 108m
Before Rook can start provisioning storage, a StorageClass needs to be created based on the filesystem. This is needed for Kubernetes to interoperate with the CSI driver to create persistent volumes.
kubectl create -f deploy/examples/csi/cephfs/storageclass-doks.yaml
Now we will create some Block Storage (RWO) PVCs and some Filesystem (RWX) PVCs and consume them using some test pods.
kubectl apply -f deploy/examples/doks/pvc-ceph-block-1.yaml
kubectl apply -f deploy/examples/doks/pvc-ceph-block-2.yaml
kubectl apply -f deploy/examples/doks/pvc-ceph-fs-1.yaml
kubectl get pvc -l test=ceph
NAME STATUS VOLUME CAPACITY ACCESS MODES STORAGECLASS AGE
ceph-block-pvc-1 Bound pvc-4901b00c-ff3c-4677-9b48-a0ae914471f8 128Mi RWO rook-ceph-block 99m
ceph-block-pvc-2 Bound pvc-b51b3549-bfcb-40b3-8248-3825d0510907 128Mi RWO rook-ceph-block 99m
ceph-filesystem-pvc Bound pvc-984cbc60-63cc-4b63-a7fd-2ac09254ef98 128Mi RWX rook-cephfs 4s
Now we'll create some pods.
Pod ceph-test-1 will mount PVC ceph-block-pvc-1 as RWO at mountPath /rwo.
Pod ceph-test-2 will mount PVC ceph-block-pvc-2 as RWO at mountPath /rwo.
All Pods including Pods from Deployment ceph-test-pods will mount PVC ceph-filesystem-pvc as RWX at mountPath /rwx
kubectl apply -f deploy/examples/doks/pod-rwo-rwx-1.yaml
kubectl apply -f deploy/examples/doks/pod-rwo-rwx-2.yaml
kubectl apply -f deploy/examples/doks/deploy-pods-rwx.yaml
Check to see the pods have been created, we notice that Pods for Deployment ceph-test-pods all end up on different worker nodes.
kubectl get pods -o wide
NAME READY STATUS RESTARTS AGE IP NODE NOMINATED NODE READINESS GATES
ceph-test-1 1/1 Running 0 20m 10.244.0.163 pool-apps-fcr0m <none> <none>
ceph-test-2 1/1 Running 0 20m 10.244.0.168 pool-apps-fcr0m <none> <none>
ceph-test-pods-7dbd695fc9-bh8wz 1/1 Running 0 5m33s 10.244.0.40 pool-apps-fcr0q <none> <none>
ceph-test-pods-7dbd695fc9-q6x6b 1/1 Running 0 5m33s 10.244.1.51 pool-apps-fcr07 <none> <none>
ceph-test-pods-7dbd695fc9-v9f7k 1/1 Running 0 5m33s 10.244.0.159 pool-apps-fcr0m <none> <none>
Check that our PVCs attached correctly:
kubectl describe pod ceph-test-1
Volumes:
ceph-block-is-rwo:
Type: PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
ClaimName: ceph-block-pvc-1
ReadOnly: false
ceph-filesystem-is-rwx:
Type: PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
ClaimName: ceph-filesystem-pvc
ReadOnly: false
Events:
Type Reason Age From Message
---- ------ ---- ---- -------
Normal Scheduled 67s default-scheduler Successfully assigned default/ceph-test-1 to pool-apps-fcr0m
Normal SuccessfulAttachVolume 67s attachdetach-controller AttachVolume.Attach succeeded for volume "pvc-aaf5e1a4-0503-4472-937b-cec2bf91f040"
Normal SuccessfulAttachVolume 67s attachdetach-controller AttachVolume.Attach succeeded for volume "pvc-f98c1386-058d-4473-bdee-ee4f62c91ce5"
Normal Pulling 62s kubelet Pulling image "nginx"
Normal Pulled 58s kubelet Successfully pulled image "nginx" in 3.783008252s (3.783027468s including waiting)
Normal Created 58s kubelet Created container volume-test
Normal Started 58s kubelet Started container volume-test
Lets test our RWX storage by creating a file from Pod 1 and reading it from other Pods
kubectl exec -it pod/ceph-test-1 -- touch /rwx/test
kubectl exec -it pod/ceph-test-1 -- touch /rwx/test1
kubectl exec -it pod/ceph-test-1 -- touch /rwx/test2
kubectl exec -it pod/ceph-test-pods-7dbd695fc9-bh8wz -- ls /rwx
test test1 test2
kubectl exec -it pod/ceph-test-pods-7dbd695fc9-q6x6b -- ls /rwx
test test1 test2
Benchmarks ran using dbench
DigitalOcean Volume limits are detailed here
Below are the results of a s-2vcpu-4gb-amd worker node with a 1TB Volume attached using the do-block-storage storageClass
==================
= Dbench Summary =
==================
Random Read/Write IOPS: 9986/9987. BW: 384MiB/s / 387MiB/s
Average Latency (usec) Read/Write: 750.36/399.11
Sequential Read/Write: 384MiB/s / 395MiB/s
Mixed Random Read/Write IOPS: 7515/2471
Below are the results of a s-2vcpu-4gb-amd worker node with a 1TB Volume attached using the rook-ceph-block storageClass
==================
= Dbench Summary =
==================
Random Read/Write IOPS: 9333/2556. BW: 222MiB/s / 164MiB/s
Average Latency (usec) Read/Write: 1410.50/
Sequential Read/Write: 235MiB/s / 204MiB/s
Mixed Random Read/Write IOPS: 3648/1218
Below are the results of a s-2vcpu-4gb-amd worker node with a 1TB Volume attached using the rook-cephfs storageClass
==================
= Dbench Summary =
==================
Random Read/Write IOPS: 6844/2187. BW: 229MiB/s / 153MiB/s
Average Latency (usec) Read/Write: 2202.73/
Sequential Read/Write: 234MiB/s / 218MiB/s
Mixed Random Read/Write IOPS: 2610/876
Need to re-write this part
- We have created a Ceph storage cluster on a DigitalOcean DOKS cluster that uses PVCs to manage storage.
- The usage of volume mounts in your deployments with Ceph is now very fast because we do not have to attach physical disks to our worker nodes anymore.
- Pods can shared storage mounts across nodes using Filesystem based RWX storage.