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@DIncalciLab

DIncalciLab

Bioinformatics software developed at the D'Incalci group, IRCCS Humanitas Research Hospital and Humanitas University.

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  1. samurai Public

    A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

    Nextflow 9

Repositories

Showing 10 of 15 repositories
  • nf-core-modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 0 MIT 836 0 0 Updated Mar 26, 2025
  • samurai Public

    A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

    Nextflow 9 MIT 0 14 1 Updated Mar 25, 2025
  • scnapattern Public

    A workflow to calculate SCNA patterns as described in Pesenti et al.

    Nextflow 0 MIT 0 0 0 Updated Mar 11, 2025
  • sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 0 MIT 440 0 0 Updated Mar 3, 2025
  • checkQC Public Forked from Molmed/checkQC

    CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

    Python 0 GPL-3.0 17 0 0 Updated Feb 26, 2025
  • SAMURAI_paper_scripts Public
    Shell 0 MIT 0 0 0 Updated Dec 9, 2024
  • samurai-test-data Public

    Public data files for SAMURAI tests

    0 MIT 0 0 0 Updated Nov 29, 2024
  • pyjanitor Public Forked from pyjanitor-devs/pyjanitor

    Clean APIs for data cleaning. Python implementation of R package Janitor

    Python 0 MIT 172 0 0 Updated Sep 12, 2024
  • LFV-benchmark Public

    A pipeline to generate and benchmark synthetic datasets as described in Sergi et al., 2024.

    Python 0 MIT 0 1 0 Updated Jan 21, 2024
  • webhook-to-matrix-hookshot Public Forked from rda0/webhook-to-matrix-hookshot

    Translate webhooks from Slack to matrix-hookshot

    Python 0 MIT 2 0 0 Updated Jan 8, 2024
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