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Merge pull request #385 from CSCfi/develop
Release 0.10.0
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,15 +1,12 @@ | ||
| describe("Basic e2e", function () { | ||
| const baseUrl = "http://localhost:" + Cypress.env("port") + "/" | ||
|
|
||
| it("should navigate to home with click of login button", () => { | ||
| cy.visit(baseUrl) | ||
| cy.get('[alt="CSC Login"]').click() | ||
| cy.login() | ||
| }) | ||
|
|
||
| it("should create new folder, add Study form, upload Study XML file, add Analysis form, and publish folder", () => { | ||
| cy.visit(baseUrl) | ||
| cy.get('[alt="CSC Login"]').click() | ||
| cy.visit(baseUrl + "newdraft") | ||
| it("should create new folder, add Study form, upload Study XML file, add Analysis form, add DAC form, and publish folder", () => { | ||
| cy.login() | ||
|
|
||
| cy.get("button", { timeout: 10000 }).contains("Create Submission").click() | ||
|
|
||
| // Navigate to folder creation | ||
| cy.get("button[type=button]").contains("New folder").click() | ||
|
|
@@ -35,17 +32,6 @@ describe("Basic e2e", function () { | |
| cy.get("button[type=submit]").contains("Submit").click() | ||
| cy.get(".MuiListItem-container", { timeout: 10000 }).should("have.length", 1) | ||
|
|
||
| // Edit saved submission | ||
| cy.get("button[type=button]").contains("Edit").click() | ||
| cy.get("input[name='descriptor.studyTitle']").should("have.value", "New title") | ||
| cy.get("input[name='descriptor.studyTitle']", { timeout: 10000 }).type(" edited") | ||
| cy.get("input[name='descriptor.studyTitle']").should("have.value", "New title edited") | ||
| cy.get("button[type=button]").contains("Update").click() | ||
| cy.get("div[role=alert]").contains("Object updated") | ||
| cy.get("button[type=button]").contains("New form").click() | ||
| cy.get("button[type=button]").contains("Edit").click() | ||
| cy.get("input[name='descriptor.studyTitle']").should("have.value", "New title edited") | ||
|
|
||
| // Upload a Study xml file. | ||
| cy.get("div[role=button]").contains("Upload XML File").click() | ||
| cy.fixture("study_test.xml").then(fileContent => { | ||
|
|
@@ -78,79 +64,92 @@ describe("Basic e2e", function () { | |
| cy.contains(".MuiAlert-message", "Object replaced") | ||
|
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||
| // Fill an Analysis form and submit object | ||
| cy.get("div[role=button]").contains("Analysis").click() | ||
| cy.get("div[role=button]") | ||
| .contains("Fill Form") | ||
| .should("be.visible") | ||
| .then($btn => $btn.click()) | ||
| cy.clickFillForm("Analysis") | ||
|
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||
| cy.get("form").within(() => { | ||
| cy.get("input[name='title']").type("Test title") | ||
|
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||
| // Analysis type | ||
| cy.get("select[name='analysisType']").select("Reference Alignment") | ||
| cy.get("select[name='analysisType.referenceAlignment.assembly']").select("Standard") | ||
| cy.get("input[name='analysisType.referenceAlignment.assembly.accessionId']").type("Standard Accession Id") | ||
| cy.get("h4").contains("Sequence").parent().children("button").click() | ||
| cy.get("input[name='analysisType.referenceAlignment.sequence[0].accessionId']").type( | ||
| "Sequence Standard Accession Id" | ||
| ) | ||
|
|
||
| // Experiment | ||
| cy.get("input[name='experimentRef.accessionId']").type("Experiment Test Accession Id") | ||
| cy.get("input[name='experimentRef.identifiers.submitterId.namespace']").type("Experiment Test Namespace") | ||
| cy.get("input[name='experimentRef.identifiers.submitterId.value']").type("Experiment Test Value") | ||
| cy.get("h2").contains("Experiment Reference").parent().children("button").click() | ||
| cy.get("input[name='experimentRef[0].accessionId']").type("Experiment Test Accession Id") | ||
| cy.get("input[name='experimentRef[0].identifiers.submitterId.namespace']").type("Experiment Test Namespace") | ||
| cy.get("input[name='experimentRef[0].identifiers.submitterId.value']").type("Experiment Test Value") | ||
|
|
||
| // Study | ||
| cy.get("input[name='studyRef.accessionId']").type("Study Test Accession Id") | ||
| cy.get("input[name='studyRef.identifiers.submitterId.namespace']").type("Study Test Namespace") | ||
| cy.get("input[name='studyRef.identifiers.submitterId.value']").type("Study Test Value") | ||
|
|
||
| // Sample | ||
| cy.get("input[name='sampleRef.accessionId']").type("Sample Test Accession Id") | ||
| cy.get("input[name='sampleRef.identifiers.submitterId.namespace']").type("Sample Test Namespace") | ||
| cy.get("input[name='sampleRef.identifiers.submitterId.value']").type("Sample Test Value") | ||
| cy.get("h2").contains("Sample Reference").parent().children("button").click() | ||
| cy.get("input[name='sampleRef[0].accessionId']").type("Sample Test Accession Id") | ||
| cy.get("input[name='sampleRef[0].identifiers.submitterId.namespace']").type("Sample Test Namespace") | ||
| cy.get("input[name='sampleRef[0].identifiers.submitterId.value']").type("Sample Test Value") | ||
|
|
||
| // Run | ||
| cy.get("input[name='runRef.accessionId']").type("Run Test Accession Id") | ||
| cy.get("input[name='runRef.identifiers.submitterId.namespace']").type("Run Test Namespace") | ||
| cy.get("input[name='runRef.identifiers.submitterId.value']").type("Run Test Value") | ||
| cy.get("h2").contains("Run Reference").parent().children("button").click() | ||
| cy.get("input[name='runRef[0].accessionId']").type("Run Test Accession Id") | ||
| cy.get("input[name='runRef[0].identifiers.submitterId.namespace']").type("Run Test Namespace") | ||
| cy.get("input[name='runRef[0].identifiers.submitterId.value']").type("Run Test Value") | ||
|
|
||
| // Analysis | ||
| cy.get("input[name='analysisRef.accessionId']").type("Analysis Test Accession Id") | ||
| cy.get("input[name='analysisRef.identifiers.submitterId.namespace']").type("Analysis Test Namespace") | ||
| cy.get("input[name='analysisRef.identifiers.submitterId.value']").type("Analysis Test Value") | ||
|
|
||
| cy.get("h3") | ||
| .contains("Reference Alignment") | ||
| .parent("div.formSection") | ||
| .within(() => { | ||
| cy.get("button").contains("Add new item").click() | ||
| cy.get("input[name='analysisType.referenceAlignment.sequence[0].accessionId']").type("Reference Accession Id") | ||
| }) | ||
|
|
||
| cy.get("h3") | ||
| .contains("Sequence Variation") | ||
| .parent("div.formSection") | ||
| .within(() => { | ||
| cy.get("input[name='analysisType.sequenceVariation.assembly.standard.accessionId']").type( | ||
| "Sequence Standard Accession Id" | ||
| ) | ||
| cy.get("button").contains("Add new item").click() | ||
| cy.get("input[name='analysisType.sequenceVariation.sequence[0].accessionId']").type( | ||
| "Sequence Sequence Accession Id" | ||
| ) | ||
| }) | ||
|
|
||
| cy.get("h3") | ||
| .contains("Processed Reads") | ||
| .parent("div.formSection") | ||
| .within(() => { | ||
| cy.get("input[name='analysisType.processedReads.assembly.standard.accessionId']").type( | ||
| "Processed Standard Accession Id" | ||
| ) | ||
| cy.get("button").contains("Add new item").click() | ||
|
|
||
| cy.get("input[name='analysisType.processedReads.sequence[0].accessionId']").type( | ||
| "Processed Sequence Accession Id" | ||
| ) | ||
| }) | ||
| cy.get("h2").contains("Analysis Reference").parent().children("button").click() | ||
| cy.get("input[name='analysisRef[0].accessionId']").type("Analysis Test Accession Id") | ||
| cy.get("input[name='analysisRef[0].identifiers.submitterId.namespace']").type("Analysis Test Namespace") | ||
| cy.get("input[name='analysisRef[0].identifiers.submitterId.value']").type("Analysis Test Value") | ||
|
|
||
| // Files | ||
| cy.get("h2").contains("Files").parent().children("button").click() | ||
| cy.get("input[name='files[0].filename']").type("filename 1") | ||
| cy.get("select[name='files[0].filetype']").select("other") | ||
| cy.get("select[name='files[0].checksumMethod']").select("MD5") | ||
| cy.get("input[name='files[0].checksum']").type("b1f4f9a523e36fd969f4573e25af4540") | ||
|
|
||
| cy.get("h2").contains("Files").parent().children("button").click() | ||
| cy.get("input[name='files[1].filename']").type("filename 2") | ||
| cy.get("select[name='files[1].filetype']").select("info") | ||
| cy.get("select[name='files[1].checksumMethod']").select("SHA-256") | ||
| cy.get("input[name='files[1].checksum']").type("c34045c1a1db8d1b3fca8a692198466952daae07eaf6104b4c87ed3b55b6af1b") | ||
| }) | ||
| // Submit form | ||
| cy.get("button[type=submit]").contains("Submit").click() | ||
| // Saved objects list should have newly added item from Analysis object | ||
| cy.get(".MuiListItem-container", { timeout: 10000 }).should("have.length", 1) | ||
|
|
||
| // DAC form | ||
| cy.get("div[role=button]", { timeout: 10000 }).contains("DAC").click({ force: true }) | ||
| cy.get("div[aria-expanded='true']", { timeout: 10000 }) | ||
| .siblings() | ||
| .within(() => | ||
| cy | ||
| .get("div[role=button]") | ||
| .contains("Fill Form", { timeout: 10000 }) | ||
| .should("be.visible") | ||
| .then($btn => $btn.click()) | ||
| ) | ||
|
|
||
| cy.get("h2").contains("Contacts").parent().children("button").click() | ||
| cy.get("[data-testid='contacts[0].name']").type("Test contact name") | ||
| cy.get("[data-testid='contacts[0].email']").type("[email protected]") | ||
| cy.get("[data-testid='contacts[0].telephoneNumber']").type(123456789) | ||
| cy.get("[data-testid='contacts[0].organisation']").type("Test organization") | ||
| // Click outside from organisation autocomplete field to hide suggestions | ||
| cy.get("[data-testid='contacts[0].telephoneNumber']").click() | ||
| cy.get("input[name='contacts[0].mainContact']").check() | ||
|
|
||
| // Submit form | ||
| cy.get("button[type=submit]").contains("Submit").click() | ||
| // Saved objects list should have newly added item from Analysis object | ||
| cy.get(".MuiListItem-container", { timeout: 10000 }).should("have.length", 1) | ||
|
|
||
| // Navigate to summary | ||
| cy.get("button[type=button]").contains("Next").click() | ||
|
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||
|
|
||
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