Skip to content

Update io_loadspec_twix.m #123

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
truonp wants to merge 6 commits into
base: master
Choose a base branch
from
Open

Update io_loadspec_twix.m #123

Changes from all commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
a226a43
Update io_loadspec_twix.m
truonp Sep 5, 2025
e121d40
Update io_loadspec_twix.m
truonp Oct 28, 2025
12fddea
Merge branch 'CIC-methods:master' into header_fix
truonp Oct 28, 2025
dea04c2
Revert "Update io_loadspec_twix.m"
truonp Oct 28, 2025
1478c90
Merge branch 'header_fix' of https://github.com/truonp/FID-A into hea…
truonp Oct 28, 2025
4afe4cf
Update io_loadspec_twix.m
truonp Oct 28, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
18 changes: 15 additions & 3 deletions inputOutput/io_loadspec_twix.m
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -101,9 +101,21 @@
%with this new condition.
squeezedData=squeeze(dOut.data);
if twix_obj.image.NCol>1 && twix_obj.image.NCha>1
data(:,:,:,1)=squeezedData(:,:,[1:2:end-1]);
data(:,:,:,2)=squeezedData(:,:,[2:2:end]);
sqzSize=[sqzSize(1) sqzSize(2) sqzSize(3)/2 2];
if isjnseq && ndims(squeezedData)>3 %Subspec 1 and 2 saved under different indices
if sum(squeezedData(:,1,2,1))~=0 %There are no zero arrays
data=squeezedData;
%sqzSize=sqzSize;
else %there are zero arrays, which means data was saved in alternating pattern within subspecs
data(:,:,:,1)=squeezedData(:,:,[1:2:end-1],1);
data(:,:,:,2)=squeezedData(:,:,[2:2:end],2);
sqzSize=[sqzSize(1) sqzSize(2) sqzSize(3)/2 2];
end
sqzDims(end)=[]; %reset the last sqzDims to make it parsing of data run typically
else
data(:,:,:,1)=squeezedData(:,:,[1:2:end-1]);
data(:,:,:,2)=squeezedData(:,:,[2:2:end]);
sqzSize=[sqzSize(1) sqzSize(2) sqzSize(3)/2 2];
end
elseif twix_obj.image.NCol>1 && twix_obj.image.NCha==1
data(:,:,1)=squeezedData(:,[1:2:end-1]);
data(:,:,2)=squeezedData(:,[2:2:end]);
Expand Down