This folder contains "recipes" for building software in different ways in CHTC -- as a container (Docker or Apptainer), a local build, or using Spack. We strongly recommend reading through the initial guides linked below (Getting Started) to have the needed context for using the installation recipes and templates in this folder.
| Software Name | Apptainer | Docker | Local Install | HPC Spack |
|---|---|---|---|---|
| Alphafold | X | - | - | - |
| Conda | X | X | - | - |
| Julia | X | - | - | - |
| Matlab | X | X | - | - |
| PALM | X | - | - | - |
| Python | X | X | - | - |
| PyTorch | X | - | - | - |
| R | X | - | - | - |
| SLEAP | X | - | - | - |
| SUMO | X | - | - | - |
If you are new to CHTC, we recommend going through these guides to orient yourself.
- Software Overview (coming soon!)
- Container Hello World (coming soon!)
In general, for the HTC system, we recommend using containers (Docker or Apptainer) when possible, with local installs as an alternative.
In the tables above, Apptainer recipes, local installs or Spack installs should all work on the HPC cluster. At this time, Apptainer recipes are not guaranteed to work successfully across multiple nodes.