React prototype

[briri]

Changes proposed in this PR:

There is a lot here. Please read through everything and note that the following need to be run as part of the deployment:

• Run rails db:migrate
• Run rails v5:upgrade_5_0 which will add API info to the registry_orgs records for NIH, NSF, NASA orgs and some that have grant ids in Crossref as well
• Update and then run the rails v5:enable_v5_pilot with the names of the Orgs you want to be a part of the React prototype pilot
• Run enable_v5_pilot:move_dmp_idswhich will move existing DMP IDs from theidentifierstable to theplans.dmp_id` field
• Run rails v5:build_narratives to rebuild all of the existing public plans PDF files and store them in ActiveStorage
• Run rails v5:seed_dmphub to seed the new DMPHub system with your DMP IDs (if you use the DMPHub and are transitioning to the new system)
• Start up the delayed_job daemon (when deploying to a server). This should only run on a single instance if your system is load balanced.

Updated Terms of Use

• Updated the "Terms of Use" page to remove Google Analytics and replace with Matomo info
• Updated the "Terms of Use" page and added info about "Sharing and Reuse" so that we cover the use of public plans for training a future LLM.
• Added a checkbox to the page where the user can change their plan's visibility. If the use selects public, then they must accept the new terms.

v4 Cleanup

• Removed column repositories.custom_repository_owner_template_id
• Removed column research_outputs.output_type
• Removed column research_outputs.output_type_description

ActiveStorage for Public DMPs:

• Added ActiveStorage tables (boilerplate)
• Added gems aws-sdk-s3 and active_storage_validations
• Updated the PlanExportsController so that it will serve up a copy of a public plan's PDF from the designated S3 bucket when the requestor is not logged in (prevents bots that crawl the site from bogging down the server)
• Added narrative to the Plan model which stores PDF narratives for public plans.
• Updated the config/environments/*.rb to use S3 for ActiveStorage (or local disk for development)
• Udated config/storage.rb to define S3 bucket

Added Delayed Job

• Added delayed_jobs table
• Added gems delayed_job_active_record and daemons
• Added subscriber_job_status and publisher_job_status to plans and drafts tables.
• Added delayed_job and daemons gems so that some of the longer running processes that connect to external content do not bog down the system.
• Added a CitationJob to fetch DOI citations asynchronously
• Updated the NotifySubscriberJob to work with the new delayed_job framework
• Added an OrcidPublisher job to make that piece of DMP registration async
• Added a PdfPublisher job that will send the PDF narrative document to the DMPHub asynchronously

React DMP Upload Prototype:

• added new column plans.dmp_id to begin storing the DMP ID directly in the plans table
• added new columns to the registry_orgs table to store information about how to connect to their external APIs
• added a new related_identifiers type called output_management_plan
• added a new orgs.v5_pilot boolean field that determines whether or not the user can access the new React prototype pages (user must also be an org admin)
• added a new dmphub_auth_url configuration item to the config/dmproadmap.yml file
• added a config/initializers/cors.rb to support external comms
• new Dockerized development environment
• added new gems rack-cors and text
• Added a drafts table to store unregistered "in progress" DMPs created by the new React dashboard
• Added a hidden_dmps table to support user's indicating that they do not want to see a registered DMP on their dashboard
• All of the new JS/SCSS code for the React prototype reside in the react-client directory in the project root
• Added API v3 components (controllers, views, presenters) that are meant to support the new pilot testing of the ReactJS DMP Upload forms
  • /api/v3/me returns the currently logged in user's name and email
  • /api/v3/contributor_roles returns the list of valid contributor roles
  • /api/v3/output_types returns the list of valid research output types
  • /api/v3/related_work_types returns the list of valid related work types
  • /api/v3/affiliations provides search/typeahead support for affiliation form fields
  • /api/v3/funders provides search/typeahead support for funder form fields
  • /api/v3/repositories provides search/typeahead support for repository form fields
  • /api/v3/awards/nih endpoint used to search the NIH API for projects
  • /api/v3/awards/nsf endpoint used to search the NSF and NASA API for projects
  • /api/v3/awards/crossref/*fundref_id endpoint used to search the Crossref Grants API (DOE, etc.) for projects
  • /api/v3/simulations endpoint which is used to simulate the discovery (by external systems) of related works
  • /api/v3/citations endpoint to retrieve BibTex citations for a given DOI
  • /api/v3/drafts Full REST support for creating/updating/deleting Draft DMPs (aka DMPs that have not been registered)
  • /api/v3/dmps Full REST support for creating/updating Registered DMPs (aka ones with a DMP ID)
• Updated the Org_Selectable controller concern to work with new React Org typeahead
• Updated the DoiService and DmphubService to allow both Plan and Draft to be sent to the DMPHub for registration/updates.
• Added a new DashboardsController that serves up the React content
• Updated PlansController to use the new Registrable model concern
• Added a new dmp_id_for_display to the DmptoolHelper
• Updated the IdentifierHelper to work with the new Registrable model concern
• added a new react-application JS asset so that the React pages get a more compact JS file than the standard Rails one
• added a Registerable model concern and included it on the Plan and new Draft models. This involved moving some of the functionality that was on the Plan model to the new concern.
• Updated v2 JSON to remove newlines and non breaking spaces from larger text fields
• Updated the User model to have drafts (used exclusively by the React prototype) and hidden_dmps for when a user opts to no longer see a registered DMP on their React dashboard
• Updated Plan children (e.g. Contributor and Answer) to call the NotifySubscriberJob
• Updated Presenters and Views to work these changes
• Updated existing gem and JS dependencies