Built site for gh-pages

BioDT · Dec 18, 2023 · 45aa29e · 45aa29e
1 parent fcdf642
commit 45aa29e
Show file tree

Hide file tree

Showing 29 changed files with 5,949 additions and 0 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/.nojekyll b/.nojekyll
@@ -0,0 +1 @@
+8eb5369b
diff --git a/about.html b/about.html
@@ -0,0 +1,311 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
+
+<meta charset="utf-8">
+<meta name="generator" content="quarto-1.2.280">
+
+<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
+
+
+<title>About IAS</title>
+<style>
+code{white-space: pre-wrap;}
+span.smallcaps{font-variant: small-caps;}
+div.columns{display: flex; gap: min(4vw, 1.5em);}
+div.column{flex: auto; overflow-x: auto;}
+div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
+ul.task-list{list-style: none;}
+ul.task-list li input[type="checkbox"] {
+  width: 0.8em;
+  margin: 0 0.8em 0.2em -1.6em;
+  vertical-align: middle;
+}
+</style>
+
+
+<script src="site_libs/quarto-nav/quarto-nav.js"></script>
+<script src="site_libs/quarto-nav/headroom.min.js"></script>
+<script src="site_libs/clipboard/clipboard.min.js"></script>
+<script src="site_libs/quarto-search/autocomplete.umd.js"></script>
+<script src="site_libs/quarto-search/fuse.min.js"></script>
+<script src="site_libs/quarto-search/quarto-search.js"></script>
+<meta name="quarto:offset" content="./">
+<script src="site_libs/quarto-html/quarto.js"></script>
+<script src="site_libs/quarto-html/popper.min.js"></script>
+<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
+<script src="site_libs/quarto-html/anchor.min.js"></script>
+<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
+<link href="site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
+<script src="site_libs/bootstrap/bootstrap.min.js"></script>
+<link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
+<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<script id="quarto-search-options" type="application/json">{
+  "location": "sidebar",
+  "copy-button": false,
+  "collapse-after": 3,
+  "panel-placement": "start",
+  "type": "textbox",
+  "limit": 20,
+  "language": {
+    "search-no-results-text": "No results",
+    "search-matching-documents-text": "matching documents",
+    "search-copy-link-title": "Copy link to search",
+    "search-hide-matches-text": "Hide additional matches",
+    "search-more-match-text": "more match in this document",
+    "search-more-matches-text": "more matches in this document",
+    "search-clear-button-title": "Clear",
+    "search-detached-cancel-button-title": "Cancel",
+    "search-submit-button-title": "Submit"
+  }
+}</script>
+
+
+<link rel="stylesheet" href="styles.css">
+</head>
+
+<body class="nav-sidebar floating fullcontent">
+
+<div id="quarto-search-results"></div>
+  <header id="quarto-header" class="headroom fixed-top">
+  <nav class="quarto-secondary-nav" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+    <div class="container-fluid d-flex justify-content-between">
+      <h1 class="quarto-secondary-nav-title">About IAS</h1>
+      <button type="button" class="quarto-btn-toggle btn" aria-label="Show secondary navigation">
+        <i class="bi bi-chevron-right"></i>
+      </button>
+    </div>
+  </nav>
+</header>
+<!-- content -->
+<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
+<!-- sidebar -->
+  <nav id="quarto-sidebar" class="sidebar collapse sidebar-navigation floating overflow-auto">
+    <div class="pt-lg-2 mt-2 text-left sidebar-header sidebar-header-stacked">
+      <a href="./index.html" class="sidebar-logo-link">
+      <img src="./assets/logo.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
+      </a>
+    <div class="sidebar-title mb-0 py-0">
+      <a href="./">IASDT-Workflows</a> 
+    </div>
+      </div>
+      <div class="mt-2 flex-shrink-0 align-items-center">
+        <div class="sidebar-search">
+        <div id="quarto-search" class="" title="Search"></div>
+        </div>
+      </div>
+    <div class="sidebar-menu-container"> 
+    <ul class="list-unstyled mt-1">
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./index.html" class="sidebar-item-text sidebar-link">Introduction</a>
+  </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./about.html" class="sidebar-item-text sidebar-link active">About IAS</a>
+  </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./architecture.html" class="sidebar-item-text sidebar-link">Architecture</a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="true">Datasets</a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="true">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./input.html" class="sidebar-item-text sidebar-link">Input Data</a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./output.html" class="sidebar-item-text sidebar-link">Output data</a>
+  </div>
+</li>
+      </ul>
+  </li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./model.html" class="sidebar-item-text sidebar-link">Model</a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <span class="sidebar-item-text sidebar-link text-start">User Guide</span>
+  </li>
+        <li class="sidebar-item sidebar-item-section">
+      <span class="sidebar-item-text sidebar-link text-start">References</span>
+  </li>
+    </ul>
+    </div>
+</nav>
+<!-- margin-sidebar -->
+
+<!-- main -->
+<main class="content" id="quarto-document-content">
+
+<header id="title-block-header" class="quarto-title-block default">
+<div class="quarto-title">
+<h1 class="title d-none d-lg-block">About IAS</h1>
+</div>
+
+
+
+<div class="quarto-title-meta">
+
+
+
+
+  </div>
+
+
+</header>
+
+<p>About this site</p>
+
+
+
+</main> <!-- /main -->
+<script id="quarto-html-after-body" type="application/javascript">
+window.document.addEventListener("DOMContentLoaded", function (event) {
+  const toggleBodyColorMode = (bsSheetEl) => {
+    const mode = bsSheetEl.getAttribute("data-mode");
+    const bodyEl = window.document.querySelector("body");
+    if (mode === "dark") {
+      bodyEl.classList.add("quarto-dark");
+      bodyEl.classList.remove("quarto-light");
+    } else {
+      bodyEl.classList.add("quarto-light");
+      bodyEl.classList.remove("quarto-dark");
+    }
+  }
+  const toggleBodyColorPrimary = () => {
+    const bsSheetEl = window.document.querySelector("link#quarto-bootstrap");
+    if (bsSheetEl) {
+      toggleBodyColorMode(bsSheetEl);
+    }
+  }
+  toggleBodyColorPrimary();  
+  const icon = "";
+  const anchorJS = new window.AnchorJS();
+  anchorJS.options = {
+    placement: 'right',
+    icon: icon
+  };
+  anchorJS.add('.anchored');
+  const clipboard = new window.ClipboardJS('.code-copy-button', {
+    target: function(trigger) {
+      return trigger.previousElementSibling;
+    }
+  });
+  clipboard.on('success', function(e) {
+    // button target
+    const button = e.trigger;
+    // don't keep focus
+    button.blur();
+    // flash "checked"
+    button.classList.add('code-copy-button-checked');
+    var currentTitle = button.getAttribute("title");
+    button.setAttribute("title", "Copied!");
+    let tooltip;
+    if (window.bootstrap) {
+      button.setAttribute("data-bs-toggle", "tooltip");
+      button.setAttribute("data-bs-placement", "left");
+      button.setAttribute("data-bs-title", "Copied!");
+      tooltip = new bootstrap.Tooltip(button, 
+        { trigger: "manual", 
+          customClass: "code-copy-button-tooltip",
+          offset: [0, -8]});
+      tooltip.show();    
+    }
+    setTimeout(function() {
+      if (tooltip) {
+        tooltip.hide();
+        button.removeAttribute("data-bs-title");
+        button.removeAttribute("data-bs-toggle");
+        button.removeAttribute("data-bs-placement");
+      }
+      button.setAttribute("title", currentTitle);
+      button.classList.remove('code-copy-button-checked');
+    }, 1000);
+    // clear code selection
+    e.clearSelection();
+  });
+  function tippyHover(el, contentFn) {
+    const config = {
+      allowHTML: true,
+      content: contentFn,
+      maxWidth: 500,
+      delay: 100,
+      arrow: false,
+      appendTo: function(el) {
+          return el.parentElement;
+      },
+      interactive: true,
+      interactiveBorder: 10,
+      theme: 'quarto',
+      placement: 'bottom-start'
+    };
+    window.tippy(el, config); 
+  }
+  const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
+  for (var i=0; i<noterefs.length; i++) {
+    const ref = noterefs[i];
+    tippyHover(ref, function() {
+      // use id or data attribute instead here
+      let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
+      try { href = new URL(href).hash; } catch {}
+      const id = href.replace(/^#\/?/, "");
+      const note = window.document.getElementById(id);
+      return note.innerHTML;
+    });
+  }
+  const findCites = (el) => {
+    const parentEl = el.parentElement;
+    if (parentEl) {
+      const cites = parentEl.dataset.cites;
+      if (cites) {
+        return {
+          el,
+          cites: cites.split(' ')
+        };
+      } else {
+        return findCites(el.parentElement)
+      }
+    } else {
+      return undefined;
+    }
+  };
+  var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
+  for (var i=0; i<bibliorefs.length; i++) {
+    const ref = bibliorefs[i];
+    const citeInfo = findCites(ref);
+    if (citeInfo) {
+      tippyHover(citeInfo.el, function() {
+        var popup = window.document.createElement('div');
+        citeInfo.cites.forEach(function(cite) {
+          var citeDiv = window.document.createElement('div');
+          citeDiv.classList.add('hanging-indent');
+          citeDiv.classList.add('csl-entry');
+          var biblioDiv = window.document.getElementById('ref-' + cite);
+          if (biblioDiv) {
+            citeDiv.innerHTML = biblioDiv.innerHTML;
+          }
+          popup.appendChild(citeDiv);
+        });
+        return popup.innerHTML;
+      });
+    }
+  }
+});
+</script>
+</div> <!-- /content -->
+
+
+
+</body></html>