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R package to support the invasive alien species (IAS) prototype Digital Twin (IAS-pDT), as part of the EU-funded BioDT project.

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IASDT.R: Modelling the distribution of invasive alien plant species in Europe


Overview

IASDT.R supports the invasive alien species (IAS) prototype Digital Twin (IAS-pDT), as part of the EU-funded BioDT project. This package provides functions for processing input data (biotic and abiotic) and modeling the distribution of invasive alien plant species across Europe using joint species distribution models. By the end of the project, it is planned that the package will enable end users to access model outputs (e.g., prediction maps) directly from R.

  • More information on the BioDT project can be found at this link.

  • For more information on the IAS-pDT, see Khan, El-Gabbas, et al. (2024)[Link]

  • The documentation of the package can be found here.

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Installing the package

The IASDT.R package is currently under development. To install the package, use the following command:

remotes::install_github(repo = "BioDT/IASDT.R", dependencies = TRUE)

To update the package, use:

remotes::update_packages("IASDT.R", dependencies = TRUE)

If you are using renv, update the package with:

renv::update("IASDT.R", prompt = FALSE)

Contribute to the package

Contributions, suggestions, and bug reports are welcome. Please make changes on a new branch and submit a pull request or make an issue here.

For questions, please get in touch with me at ahmed.el-gabbas[at]ufz[dot]de


Citation

If you use the IASDT.R package in your research, please cite it as:

El-Gabbas A. (2025). IASDT.R: Modelling the distribution of invasive alien plant species in Europe. R package version 0.1.02. DOI: 10.5281/zenodo.14834385. https://github.com/BioDT/IASDT.R; https://biodt.eu.

Last update: 2025-02-07

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R package to support the invasive alien species (IAS) prototype Digital Twin (IAS-pDT), as part of the EU-funded BioDT project.

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