Reuse

.dockerignore

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 .git
 .github
 .env

.gitattributes

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 src/main/webapp/static/css/* linguist-vendored
 src/main/webapp/static/com/atomgraph/linkeddatahub/js/saxon-js/* linguist-vendored
 src/main/webapp/static/com/atomgraph/linkeddatahub/js/wymeditor/* linguist-vendored

.github/workflows/http-tests.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 name: HTTP-tests
 
 on: push

.gitignore

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 /target
 /certs
 /.env

CHANGELOG.md

@@ -1,3 +1,20 @@
+<!-- 
+SPDX-FileCopyrightText: 2017 Martynas Jusevicius <[email protected]>
+SPDX-FileCopyrightText: 2017 LinkedDataHub
+
+SPDX-License-Identifier: Apache-2.0
+
+LinkedDataHub
+-->
+
+
+
+
+<<<<<<< HEAD
+
+
+
+=======
 ## [3.2.3] - 2022-06-30
 ### Added
 - The persistent storage of `refresh_token`s allows long-lived sessions when authenticated with Google login
@@ -18,6 +35,7 @@
 - SPARQL updates submitted to the Graph Store via the `PATCH` method now have to use the default graph context, the `GRAPH` keyword is disallowed
 - Fixed caching of delegated WebID agents, eliminating an unnecessary request with each authentication
 - Multiple `Link` headers combined into a single one with concatenated values
+>>>>>>> d08c2ba5572686ff28f238c2db30871ba70caad4
 
 ## [3.1.9] - 2022-05-23
 ### Added
@@ -167,4 +185,4 @@
 
 ### Removed
 - Expensive join with the provenance graph from the `laclt:ConstructAgentItem` query. As a result, `dct:created` value is not included in agent's description.
-- Unnecessary methods from the `Import` Java interface. Passing arguments directly to `ImportListener` instead
+- Unnecessary methods from the `Import` Java interface. Passing arguments directly to `ImportListener` instead

Dockerfile

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 FROM maven:3.8.4-openjdk-17 as maven
 
 # download and extract Jena

LICENSES/Apache-2.0.txt

@@ -0,0 +1,202 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
+      "Legal Entity" shall mean the union of the acting entity and all
+      other entities that control, are controlled by, or are under common
+      control with that entity. For the purposes of this definition,
+      "control" means (i) the power, direct or indirect, to cause the
+      direction or management of such entity, whether by contract or
+      otherwise, or (ii) ownership of fifty percent (50%) or more of the
+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
+      exercising permissions granted by this License.
+
+      "Source" form shall mean the preferred form for making modifications,
+      including but not limited to software source code, documentation
+      source, and configuration files.
+
+      "Object" form shall mean any form resulting from mechanical
+      transformation or translation of a Source form, including but
+      not limited to compiled object code, generated documentation,
+      and conversions to other media types.
+
+      "Work" shall mean the work of authorship, whether in Source or
+      Object form, made available under the License, as indicated by a
+      copyright notice that is included in or attached to the work
+      (an example is provided in the Appendix below).
+
+      "Derivative Works" shall mean any work, whether in Source or Object
+      form, that is based on (or derived from) the Work and for which the
+      editorial revisions, annotations, elaborations, or other modifications
+      represent, as a whole, an original work of authorship. For the purposes
+      of this License, Derivative Works shall not include works that remain
+      separable from, or merely link (or bind by name) to the interfaces of,
+      the Work and Derivative Works thereof.
+
+      "Contribution" shall mean any work of authorship, including
+      the original version of the Work and any modifications or additions
+      to that Work or Derivative Works thereof, that is intentionally
+      submitted to Licensor for inclusion in the Work by the copyright owner
+      or by an individual or Legal Entity authorized to submit on behalf of
+      the copyright owner. For the purposes of this definition, "submitted"
+      means any form of electronic, verbal, or written communication sent
+      to the Licensor or its representatives, including but not limited to
+      communication on electronic mailing lists, source code control systems,
+      and issue tracking systems that are managed by, or on behalf of, the
+      Licensor for the purpose of discussing and improving the Work, but
+      excluding communication that is conspicuously marked or otherwise
+      designated in writing by the copyright owner as "Not a Contribution."
+
+      "Contributor" shall mean Licensor and any individual or Legal Entity
+      on behalf of whom a Contribution has been received by Licensor and
+      subsequently incorporated within the Work.
+
+   2. Grant of Copyright License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      copyright license to reproduce, prepare Derivative Works of,
+      publicly display, publicly perform, sublicense, and distribute the
+      Work and such Derivative Works in Source or Object form.
+
+   3. Grant of Patent License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      (except as stated in this section) patent license to make, have made,
+      use, offer to sell, sell, import, and otherwise transfer the Work,
+      where such license applies only to those patent claims licensable
+      by such Contributor that are necessarily infringed by their
+      Contribution(s) alone or by combination of their Contribution(s)
+      with the Work to which such Contribution(s) was submitted. If You
+      institute patent litigation against any entity (including a
+      cross-claim or counterclaim in a lawsuit) alleging that the Work
+      or a Contribution incorporated within the Work constitutes direct
+      or contributory patent infringement, then any patent licenses
+      granted to You under this License for that Work shall terminate
+      as of the date such litigation is filed.
+
+   4. Redistribution. You may reproduce and distribute copies of the
+      Work or Derivative Works thereof in any medium, with or without
+      modifications, and in Source or Object form, provided that You
+      meet the following conditions:
+
+      (a) You must give any other recipients of the Work or
+          Derivative Works a copy of this License; and
+
+      (b) You must cause any modified files to carry prominent notices
+          stating that You changed the files; and
+
+      (c) You must retain, in the Source form of any Derivative Works
+          that You distribute, all copyright, patent, trademark, and
+          attribution notices from the Source form of the Work,
+          excluding those notices that do not pertain to any part of
+          the Derivative Works; and
+
+      (d) If the Work includes a "NOTICE" text file as part of its
+          distribution, then any Derivative Works that You distribute must
+          include a readable copy of the attribution notices contained
+          within such NOTICE file, excluding those notices that do not
+          pertain to any part of the Derivative Works, in at least one
+          of the following places: within a NOTICE text file distributed
+          as part of the Derivative Works; within the Source form or
+          documentation, if provided along with the Derivative Works; or,
+          within a display generated by the Derivative Works, if and
+          wherever such third-party notices normally appear. The contents
+          of the NOTICE file are for informational purposes only and
+          do not modify the License. You may add Your own attribution
+          notices within Derivative Works that You distribute, alongside
+          or as an addendum to the NOTICE text from the Work, provided
+          that such additional attribution notices cannot be construed
+          as modifying the License.
+
+      You may add Your own copyright statement to Your modifications and
+      may provide additional or different license terms and conditions
+      for use, reproduction, or distribution of Your modifications, or
+      for any such Derivative Works as a whole, provided Your use,
+      reproduction, and distribution of the Work otherwise complies with
+      the conditions stated in this License.
+
+   5. Submission of Contributions. Unless You explicitly state otherwise,
+      any Contribution intentionally submitted for inclusion in the Work
+      by You to the Licensor shall be under the terms and conditions of
+      this License, without any additional terms or conditions.
+      Notwithstanding the above, nothing herein shall supersede or modify
+      the terms of any separate license agreement you may have executed
+      with Licensor regarding such Contributions.
+
+   6. Trademarks. This License does not grant permission to use the trade
+      names, trademarks, service marks, or product names of the Licensor,
+      except as required for reasonable and customary use in describing the
+      origin of the Work and reproducing the content of the NOTICE file.
+
+   7. Disclaimer of Warranty. Unless required by applicable law or
+      agreed to in writing, Licensor provides the Work (and each
+      Contributor provides its Contributions) on an "AS IS" BASIS,
+      WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+      implied, including, without limitation, any warranties or conditions
+      of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
+      PARTICULAR PURPOSE. You are solely responsible for determining the
+      appropriateness of using or redistributing the Work and assume any
+      risks associated with Your exercise of permissions under this License.
+
+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
+      incidental, or consequential damages of any character arising as a
+      result of this License or out of the use or inability to use the
+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
+      other commercial damages or losses), even if such Contributor
+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
+      and charge a fee for, acceptance of support, warranty, indemnity,
+      or other liability obligations and/or rights consistent with this
+      License. However, in accepting such obligations, You may act only
+      on Your own behalf and on Your sole responsibility, not on behalf
+      of any other Contributor, and only if You agree to indemnify,
+      defend, and hold each Contributor harmless for any liability
+      incurred by, or claims asserted against, such Contributor by reason
+      of your accepting any such warranty or additional liability.
+
+   END OF TERMS AND CONDITIONS
+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "{}"
+      replaced with your own identifying information. (Don't include
+      the brackets!)  The text should be enclosed in the appropriate
+      comment syntax for the file format. We also recommend that a
+      file or class name and description of purpose be included on the
+      same "printed page" as the copyright notice for easier
+      identification within third-party archives.
+
+   Copyright 2019 Linked Data, UAB
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+

README.md

@@ -1,3 +1,13 @@
+<!-- 
+SPDX-FileCopyrightText: 2017 Martynas Jusevicius <[email protected]>
+SPDX-FileCopyrightText: 2017 LinkedDataHub
+
+SPDX-License-Identifier: Apache-2.0
+
+LinkedDataHub
+-->
+
+
 # The Knowledge Graph notebook
 
 **_LinkedDataHub_ (LDH) is open source software you can use to manage data, create visualizations and build apps on RDF Knowledge Graphs.**

docker-compose.debug.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 version: "2.3"
 services:
   linkeddatahub:

docker-compose.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 version: "2.3"
 services:
   nginx:

generate-sef.sh

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2017-2022 2017 Martynas Jusevicius, <[email protected]> et al.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 # build WAR file
 
 mvn war:war

http-tests/admin/GET-agent-mbox-html.sh

@@ -1,4 +1,13 @@
 #!/usr/bin/env bash
+
+
+# SPDX-FileCopyrightText: 2017 Martynas Jusevicius <[email protected]> 
+# SPDX-FileCopyrightText: 2017 LinkedDataHub
+#
+# SPDX-License-Identifier: Apache-2.0
+
+# LinkedDataHub
+
 set -euo pipefail
 
 initialize_dataset "$END_USER_BASE_URL" "$TMP_END_USER_DATASET" "$END_USER_ENDPOINT_URL"
@@ -18,4 +27,4 @@ echo "$html" | grep -v "http://xmlns.com/foaf/0.1/mbox" > /dev/null
 
 # check that the description includes foaf:mbox_sha1sum property
 
-echo "$html" | grep "http://xmlns.com/foaf/0.1/mbox_sha1sum" > /dev/null
+echo "$html" | grep "http://xmlns.com/foaf/0.1/mbox_sha1sum" > /dev/null

http-tests/admin/GET-agent-mbox-ntriples.sh

@@ -1,4 +1,14 @@
 #!/usr/bin/env bash
+
+
+# SPDX-FileCopyrightText: 2017 Martynas Jusevicius <[email protected]> 
+# SPDX-FileCopyrightText: 2017 LinkedDataHub
+#
+# SPDX-License-Identifier: Apache-2.0
+
+# LinkedDataHub
+
+
 set -euo pipefail
 
 initialize_dataset "$END_USER_BASE_URL" "$TMP_END_USER_DATASET" "$END_USER_ENDPOINT_URL"
@@ -18,4 +28,4 @@ echo "$ntriples" | grep "http://xmlns.com/foaf/0.1/mbox" > /dev/null
 
 # check that the description includes foaf:mbox_sha1sum property
 
-echo "$ntriples" | grep "http://xmlns.com/foaf/0.1/mbox_sha1sum" > /dev/null
+echo "$ntriples" | grep "http://xmlns.com/foaf/0.1/mbox_sha1sum" > /dev/null

http-tests/admin/GET-request-access-html.sh

@@ -1,4 +1,14 @@
 #!/usr/bin/env bash
+
+
+# SPDX-FileCopyrightText: 2017 Martynas Jusevicius <[email protected]> 
+# SPDX-FileCopyrightText: 2017 LinkedDataHub
+#
+# SPDX-License-Identifier: Apache-2.0
+
+# LinkedDataHub
+
+
 set -euo pipefail
 
 initialize_dataset "$END_USER_BASE_URL" "$TMP_END_USER_DATASET" "$END_USER_ENDPOINT_URL"
@@ -14,4 +24,4 @@ curl -k -w "%{http_code}\n" -o /dev/null -f -s \
   -H 'Accept: text/html' \
   --data-urlencode "access-to=${END_USER_BASE_URL}" \
   "${ADMIN_BASE_URL}request%20access" \
-| grep -q "$STATUS_OK"
+| grep -q "$STATUS_OK"