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Bugfixes to get it to actually run and pass tests.
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LTLA committed Sep 29, 2023
1 parent f023aa3 commit 8d100cf
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Showing 4 changed files with 11 additions and 4 deletions.
3 changes: 3 additions & 0 deletions setup.cfg
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Expand Up @@ -49,6 +49,9 @@ package_dir =
# For more information, check out https://semver.org/.
install_requires =
importlib-metadata; python_version<"3.8"
dolomite_base
dolomite_se
SummarizedExperiment


[options.packages.find]
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2 changes: 1 addition & 1 deletion src/dolomite_sce/__init__.py
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Expand Up @@ -16,4 +16,4 @@
del version, PackageNotFoundError


from ._load_single_cell_experiment import load_single_cell_experiment
from .load_single_cell_experiment import load_single_cell_experiment
5 changes: 2 additions & 3 deletions src/dolomite_sce/load_single_cell_experiment.py
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@@ -1,8 +1,7 @@
from typing import Any
from dolomite_se import load_summarized_experiment


def load_single_cell_experiment(meta: dict[str, Any], project) -> SingleCellExperiment:
def load_single_cell_experiment(meta: dict[str, Any], project):
# TODO: actually load an SCE once the SCE package has cleaned up its shit.
return load_summarized_experiment(meta, project)


5 changes: 5 additions & 0 deletions tests/test_stage_single_cell_experiment.py
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@@ -0,0 +1,5 @@
from dolomite_base import stage_object, load_object
import dolomite_sce

def test_stage_sce_basic():
pass

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