update asp to 3.3.0 #109
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# Trigger the workflow on push or pull request | |
on: | |
pull_request: | |
push: | |
branches: | |
- main | |
env: | |
# Increase this value to reset cache | |
ISIS_CACHE_NUMBER: 34 | |
ASAP_CACHE_NUMBER: 7 | |
ASP_CACHE_NUMBER: 4 | |
jobs: | |
cache_asp: | |
name: Cache ASP distribution | |
runs-on: "ubuntu-latest" | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Cache ASP tarball | |
id: cache-asap | |
uses: actions/cache@v3 | |
with: | |
path: "/tmp/sp.tar.bz2" | |
key: asp-env-${{ runner.os }}-${{ env.ASP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: Download ASP tarball to tmp | |
run: | | |
wget -c https://github.com/NeoGeographyToolkit/StereoPipeline/releases/download/3.3.0/StereoPipeline-3.3.0-Linux.tar.bz2 -O /tmp/sp.tar.bz2 --progress=dot:giga | |
ls /tmp/sp.tar.bz2 | |
cache_isis_env: | |
name: Cache ISIS conda environment | |
runs-on: "ubuntu-latest" | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Cache ISIS conda env | |
id: cache-isis | |
uses: actions/cache@v3 | |
with: | |
path: "isis-env.tar.gz" | |
key: isis-env-${{ runner.os }}-${{ env.ISIS_CACHE_NUMBER }}-${{ hashFiles('isis.yml') }} | |
- name: setup isis conda env | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
uses: conda-incubator/[email protected] | |
with: | |
miniforge-variant: Mambaforge | |
channels: usgs-astrogeology,conda-forge,defaults | |
activate-environment: isis_for_asp | |
environment-file: isis.yml | |
auto-update-conda: true | |
use-only-tar-bz2: true | |
- name: patch cspice so file | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: | | |
ls $CONDA/envs/isis_for_asp/lib/ | |
ln -s $CONDA/envs/isis_for_asp/lib/libcspice.so $CONDA/envs/isis_for_asp/lib/libcspice.so.66 | |
- name: conda info for isis | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: | | |
echo $PATH | |
conda env config vars list | |
conda info | |
conda list | |
- name: synce base kernels 1 | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: downloadIsisData base $CONDA/envs/isis_for_asp/data/ --include='*/' --include="kernels.*.db" | |
- name: synce base kernels 2 | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: downloadIsisData base $CONDA/envs/isis_for_asp/data/ --exclude='kernels/' --exclude="dems/" --exclude="testData/" | |
- name: rsync base kernels | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: | | |
mkdir -p $CONDA/envs/isis_for_asp/data/base/kernels/spk/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/base/kernels/lsk/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/base/kernels/pck/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/base/dems/ | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/de430.bsp -O $CONDA/envs/isis_for_asp/data/base/kernels/spk/de430.bsp | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/mar097.bsp -O $CONDA/envs/isis_for_asp/data/base/kernels/spk/mar097.bsp | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/naif0012.tls -O $CONDA/envs/isis_for_asp/data/base/kernels/lsk/naif0012.tls | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/pck00009.tpc -O $CONDA/envs/isis_for_asp/data/base/kernels/pck/pck00009.tpc | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/molaMarsPlanetaryRadius0005_cropped.cub -O $CONDA/envs/isis_for_asp/data/base/dems/molaMarsPlanetaryRadius0005.cub | |
ls $CONDA/envs/isis_for_asp/data/base/kernels/spk/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/base/kernels/lsk/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/base/kernels/pck/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/base/dems/ -lahtr | |
- name: synce mro kernels 1 | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: downloadIsisData mro $CONDA/envs/isis_for_asp/data/ --exclude='spk/' --exclude="sclk/" --exclude="ck/" --exclude="fk/" --exclude="iak/" --exclude="testData" | |
- name: synce mro kernels 2 | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: downloadIsisData mro $CONDA/envs/isis_for_asp/data/ --include='*/' --include="kernels.*.db" --include="*.db" --exclude="*" | |
- name: synce mro kernels 3 | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: downloadIsisData mro $CONDA/envs/isis_for_asp/data/ --include="*pck/*" | |
- name: rsync mro data | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: | | |
mkdir -p $CONDA/envs/isis_for_asp/data/mro/kernels/spk/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/mro/kernels/sclk/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/mro/kernels/ck/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/mro/kernels/pck/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/mro/kernels/iak/ | |
mkdir -p $CONDA/envs/isis_for_asp/data/mro/kernels/fk/ | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/mro_v15.tf -O $CONDA/envs/isis_for_asp/data/mro/kernels/fk/mro_v15.tf | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/MRO_SCLKSCET.00090.65536.tsc -O $CONDA/envs/isis_for_asp/data/mro/kernels/sclk/MRO_SCLKSCET.00090.65536.tsc | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/mroctxAddendum005.ti -O $CONDA/envs/isis_for_asp/data/mro/kernels/iak/mroctxAddendum005.ti | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/mro_sc_psp_061219_061225_subset.bc -O $CONDA/envs/isis_for_asp/data/mro/kernels/ck/mro_sc_psp_061219_061225.bc | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/mro_sc_psp_081028_081103_subset.bc -O $CONDA/envs/isis_for_asp/data/mro/kernels/ck/mro_sc_psp_081028_081103.bc | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/mro_psp1_ssd_mro110c_subset.bsp -O $CONDA/envs/isis_for_asp/data/mro/kernels/spk/mro_psp1_ssd_mro110c.bsp | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/mro_psp9_ssd_mro110c_subset.bsp -O $CONDA/envs/isis_for_asp/data/mro/kernels/spk/mro_psp9_ssd_mro110c.bsp | |
wget https://github.com/AndrewAnnex/asap_stereo_test_data/raw/master/pck00009.tpc -O $CONDA/envs/isis_for_asp/data/mro/kernels/pck/pck00009.tpc | |
ls $CONDA/envs/isis_for_asp/data/mro/kernels/spk/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/mro/kernels/sclk/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/mro/kernels/ck/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/mro/kernels/pck/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/mro/kernels/iak/ -lahtr | |
ls $CONDA/envs/isis_for_asp/data/mro/kernels/fk/ -lahtr | |
- name: show contents of data | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: ls -R $CONDA/envs/isis_for_asp/data/ | |
- name: pack isis conda env | |
if: steps.cache-isis.outputs.cache-hit != 'true' | |
run: | | |
tar -czf isis-env.tar.gz $CONDA/envs/isis_for_asp | |
pwd | |
ls -lahtr | |
cache_asap_env: | |
name: Cache ASAP conda environment | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Cache ASAP conda env | |
id: cache-asap | |
uses: actions/cache@v3 | |
with: | |
path: "asap-env.tar.gz" | |
key: asap-env-${{ runner.os }}-${{ env.ASAP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: setup asap conda env | |
if: steps.cache-asap.outputs.cache-hit != 'true' | |
uses: conda-incubator/[email protected] | |
with: | |
activate-environment: asap | |
miniforge-variant: Mambaforge | |
channels: conda-forge | |
environment-file: asap.yml | |
python-version: '3.11' | |
auto-update-conda: true | |
use-only-tar-bz2: false | |
- name: add ASP and ISIS to PATH of asap conda | |
if: steps.cache-asap.outputs.cache-hit != 'true' | |
run: | | |
conda env config vars set ISISROOT=$CONDA/envs/isis_for_asp | |
conda env config vars set ISISDATA=$CONDA/envs/isis_for_asp/data | |
conda env config vars set ISISTESTDATA=$CONDA/envs/isis_for_asp/testdata | |
conda env config vars set PATH=$PATH:/tmp/sp/bin:$CONDA/envs/isis_for_asp/bin | |
- name: conda info | |
if: steps.cache-asap.outputs.cache-hit != 'true' | |
run: | | |
echo $PATH | |
conda env config vars list | |
conda info | |
conda list | |
- name: pack asap conda env | |
if: steps.cache-asap.outputs.cache-hit != 'true' | |
run: | | |
tar -cvzf asap-env.tar.gz $CONDA/envs/asap | |
pwd | |
ls -lahtr | |
test_basic: | |
name: Basic ASAP Tests | |
needs: [ cache_asp, cache_isis_env, cache_asap_env ] | |
runs-on: "ubuntu-latest" | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup default miniconda | |
uses: conda-incubator/[email protected] | |
with: | |
miniforge-variant: Mambaforge | |
- name: Get ASP from cache | |
uses: actions/cache@v3 | |
with: | |
path: "/tmp/sp.tar.bz2" | |
key: asp-env-${{ runner.os }}-${{ env.ASP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: Extract ASP tarball to tmp | |
run: | | |
mkdir /tmp/sp | |
tar -xf /tmp/sp.tar.bz2 -C /tmp/sp --strip-components 1 | |
rm /tmp/sp.tar.bz2 | |
ls /tmp/sp | |
- name: Get ISIS Conda environment from cache | |
uses: actions/cache@v3 | |
with: | |
path: "isis-env.tar.gz" | |
key: isis-env-${{ runner.os }}-${{ env.ISIS_CACHE_NUMBER }}-${{ hashFiles('isis.yml') }} | |
- name: Unpack ISIS Conda environment | |
run: | | |
mkdir -p $CONDA/envs/isis_for_asp | |
tar -xvf isis-env.tar.gz -C / | |
rm isis-env.tar.gz | |
- name: Get ASAP Conda environment from cache | |
uses: actions/cache@v3 | |
with: | |
path: "asap-env.tar.gz" | |
key: asap-env-${{ runner.os }}-${{ env.ASAP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: Unpack ASAP Conda environment | |
run: | | |
mkdir -p $CONDA/envs/asap | |
tar -xvf asap-env.tar.gz -C / | |
rm asap-env.tar.gz | |
- name: show contents of data | |
run: ls -R $CONDA/envs/isis_for_asp/data/ | |
- name: Check contents of isis env | |
run: | | |
pwd | |
echo $CONDA | |
ls -lahtr | |
ls $CONDA/ | |
ls $CONDA/envs/isis_for_asp -lahtr | |
ls $CONDA/envs/isis_for_asp/bin -lahtr | |
ls $CONDA/envs/isis_for_asp/data/base/kernels/lsk/ -lahtr | |
- name: Install asap | |
run: | | |
conda activate asap | |
pip install -e . | |
- name: Conda info for asap | |
run: | | |
conda activate asap | |
echo $PATH | |
conda env config vars list | |
conda info | |
conda list | |
- name: Check isis shared libraries | |
run: | | |
conda activate asap | |
ldd `which qview` | |
- name: Test for asap | |
run: | | |
conda activate asap | |
asap | |
asap ctx | |
asap hirise | |
asap common | |
- name: Test readme rendering | |
run: | | |
conda activate asap | |
python -m readme_renderer README.rst | |
test_runner: | |
name: ASAP test CTX pipeline | |
needs: [cache_asp, cache_isis_env, cache_asap_env] | |
runs-on: "ubuntu-latest" | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup default miniconda | |
uses: conda-incubator/[email protected] | |
with: | |
miniforge-variant: Mambaforge | |
- name: Get ASP from cache | |
uses: actions/cache@v3 | |
with: | |
path: "/tmp/sp.tar.bz2" | |
key: asp-env-${{ runner.os }}-${{ env.ASP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: Extract ASP tarball to tmp | |
run: | | |
mkdir /tmp/sp | |
tar -xf /tmp/sp.tar.bz2 -C /tmp/sp --strip-components 1 | |
rm /tmp/sp.tar.bz2 | |
ls /tmp/sp | |
- name: Get ISIS Conda environment from cache | |
uses: actions/cache@v3 | |
with: | |
path: "isis-env.tar.gz" | |
key: isis-env-${{ runner.os }}-${{ env.ISIS_CACHE_NUMBER }}-${{ hashFiles('isis.yml') }} | |
- name: Unpack ISIS Conda environment | |
run: | | |
mkdir -p $CONDA/envs/isis_for_asp | |
tar -xzf "isis-env.tar.gz" -C / | |
rm isis-env.tar.gz | |
- name: Get ASAP Conda environment from cache | |
uses: actions/cache@v3 | |
with: | |
path: "asap-env.tar.gz" | |
key: asap-env-${{ runner.os }}-${{ env.ASAP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: Unpack ASAP Conda environment | |
run: | | |
mkdir -p $CONDA/envs/asap | |
tar -xvf asap-env.tar.gz -C / | |
rm asap-env.tar.gz | |
- name: show contents of data | |
run: ls -R $CONDA/envs/isis_for_asp/data/ | |
- name: Check contents of isis env | |
run: | | |
pwd | |
echo $CONDA | |
ls -lahtr | |
ls $CONDA/ | |
ls $CONDA/envs/isis_for_asp -lahtr | |
ls $CONDA/envs/isis_for_asp/bin -lahtr | |
ls $CONDA/envs/isis_for_asp/data/base/kernels/lsk/ -lahtr | |
- name: Install asap | |
run: | | |
conda activate asap | |
pip install -e . | |
- name: conda info for asap | |
run: | | |
conda activate asap | |
echo $PATH | |
conda env config vars list | |
conda info | |
conda list | |
- name: check isis shared libraries | |
run: | | |
conda activate asap | |
ldd `which qview` | |
- name: test for asap | |
run: | | |
conda activate asap | |
asap | |
- name: asap step 1 | |
timeout-minutes: 5 | |
run: | | |
conda activate asap | |
asap ctx step-1 B03_010644_1889_XN_08N001W P02_001902_1889_XI_08N001W | |
- name: look before you leap | |
run: | | |
conda activate asap | |
ls ./* -lahtr | |
head -n 20 ./*.IMG | |
env | grep ISIS | |
pwd | |
- name: asap step 2 | |
timeout-minutes: 1 | |
run: | | |
conda activate asap | |
asap ctx step-2 | |
- name: asap stereo quality report | |
run: | | |
conda activate asap | |
ls | |
asap common get_stereo_quality_report ./B03_010644_1889_XN_08N001W.lev1eo.cub ./P02_001902_1889_XI_08N001W.lev1eo.cub | |
ls | |
- name: asap 4 & rescale images for test | |
run: | | |
conda activate asap | |
asap ctx step-3 | |
- name: asap step 4 | |
run: | | |
conda activate asap | |
asap ctx step-4 | |
- name: asap step 5 (and get stereo conf files) | |
run: | | |
conda activate asap | |
wget https://raw.githubusercontent.com/NeoGeographyToolkit/StereoPipeline/master/examples/CTX/stereo.nonmap | |
wget https://raw.githubusercontent.com/NeoGeographyToolkit/StereoPipeline/master/examples/CTX/stereo.map | |
asap ctx step-5 ./stereo.nonmap | |
- name: asap step 6 | |
run: | | |
conda activate asap | |
asap ctx step-6 ./stereo.nonmap | |
- name: asap step 7-8 | |
run: | | |
conda activate asap | |
asap ctx step-7 --mpp 100 --dem_hole_fill_len 50 | |
asap ctx step-8 | |
- name: asap 1st round previews | |
run: | | |
conda activate asap | |
ls -lahtr $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_ba/ | |
gdal_translate -of PNG $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_ba/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_ba-GoodPixelMap.tif ./good_pixel_map_1.png | |
ls -lahtr $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_ba/dem/ | |
gdal_translate -of PNG $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_ba/dem/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_ba_100_0-DEM-hillshade.tif ./hillshade_1.png | |
- name: Archive First Round Previews | |
uses: actions/upload-artifact@v3 | |
with: | |
name: first-round | |
path: | | |
good_pixel_map_1.png | |
hillshade_1.png | |
- name: asap step 9 | |
run: | | |
conda activate asap | |
asap ctx step-9 --refdem $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_ba/dem/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_ba_100_0-DEM.tif --mpp 25 | |
- name: asap step 10-11 | |
run: | | |
conda activate asap | |
asap ctx step-10 --refdem $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_ba/dem/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_ba_100_0-DEM.tif ./stereo.map | |
asap ctx step-11 --refdem $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_ba/dem/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_ba_100_0-DEM.tif ./stereo.map | |
asap ctx step-7 --mpp 50 --run results_map_ba | |
asap ctx step-8 --run results_map_ba | |
- name: asap step 12 | |
run: | | |
conda activate asap | |
asap ctx step-12 None | |
- name: asap 2nd round previews | |
run: | | |
conda activate asap | |
gdal_translate -of PNG $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_map_ba/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_ba-GoodPixelMap.tif ./good_pixel_map_2.png | |
gdal_translate -of PNG $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_map_ba/dem/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_ba_50_0-DEM-hillshade.tif ./hillshade_2.png | |
- name: Archive 2nd Round Previews | |
uses: actions/upload-artifact@v3 | |
with: | |
name: second-round | |
path: | | |
good_pixel_map_2.png | |
hillshade_2.png | |
- name: list contents of results_map_ba/dem | |
run: ls $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_map_ba/dem/ -lahtr | |
- name: asap step 13-17 | |
timeout-minutes: 2 | |
run: | | |
conda activate asap | |
asap ctx step-13 --highest_accuracy False --max-num-reference-points 100000 --max-num-source-points 10000 | |
asap ctx step-14 --mpp 50 | |
asap ctx step-15 | |
asap ctx step_8 --run results_map_ba --output_folder dem_align | |
asap ctx step_14 --mpp 25 --just_ortho True | |
- name: asap final previews | |
run: | | |
conda activate asap | |
gdal_translate -ot Byte -scale 0 1 -of PNG $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_map_ba/dem_align/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_map_ba_align_25_0-DRG.tif ./vis_f.png | |
gdal_translate -of PNG $(pwd)/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/results_map_ba/dem_align/B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W_map_ba_align_50_0-DEM-hillshade.tif ./hillshade_f.png | |
- name: LS directories to see what was made | |
continue-on-error: true | |
if: always() | |
run: | | |
ls -lahtr | |
ls ./B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/* -lahtr | |
ls ./*/*/* -lahtr | |
- name: Archive Final Previews | |
uses: actions/upload-artifact@v3 | |
if: always() | |
with: | |
name: final_ctx | |
path: | | |
*.log | |
hillshade_f.png | |
vis_f.png | |
./B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/*.json | |
test_notebook: | |
name: ASAP test Notebook CTX pipeline | |
needs: [cache_asp, cache_isis_env, cache_asap_env] | |
runs-on: "ubuntu-latest" | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup default miniconda | |
uses: conda-incubator/[email protected] | |
with: | |
miniforge-variant: Mambaforge | |
- name: Get ASP from cache | |
uses: actions/cache@v3 | |
with: | |
path: "/tmp/sp.tar.bz2" | |
key: asp-env-${{ runner.os }}-${{ env.ASP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: Extract ASP tarball to tmp | |
run: | | |
mkdir /tmp/sp | |
tar -xf /tmp/sp.tar.bz2 -C /tmp/sp --strip-components 1 | |
rm /tmp/sp.tar.bz2 | |
ls /tmp/sp | |
- name: Get ISIS Conda environment from cache | |
uses: actions/cache@v3 | |
with: | |
path: "isis-env.tar.gz" | |
key: isis-env-${{ runner.os }}-${{ env.ISIS_CACHE_NUMBER }}-${{ hashFiles('isis.yml') }} | |
- name: Unpack ISIS Conda environment | |
run: | | |
mkdir -p $CONDA/envs/isis_for_asp | |
tar -xvf isis-env.tar.gz -C / | |
rm isis-env.tar.gz | |
- name: Get ASAP Conda environment from cache | |
uses: actions/cache@v3 | |
with: | |
path: "asap-env.tar.gz" | |
key: asap-env-${{ runner.os }}-${{ env.ASAP_CACHE_NUMBER }}-${{ hashFiles('asap.yml') }} | |
- name: Unpack ASAP Conda environment | |
run: | | |
mkdir -p $CONDA/envs/asap | |
tar -xvf asap-env.tar.gz -C / | |
rm asap-env.tar.gz | |
- name: show contents of data | |
run: ls -R $CONDA/envs/isis_for_asp/data/ | |
- name: Check contents of isis env | |
run: | | |
pwd | |
echo $CONDA | |
ls -lahtr | |
ls $CONDA/ | |
ls $CONDA/envs/isis_for_asp -lahtr | |
ls $CONDA/envs/isis_for_asp/bin -lahtr | |
ls $CONDA/envs/isis_for_asp/data/base/kernels/lsk/ -lahtr | |
- name: Install asap | |
run: | | |
conda activate asap | |
pip install -e . | |
- name: Conda info for asap | |
run: | | |
conda activate asap | |
echo $PATH | |
conda env config vars list | |
conda info | |
conda list | |
- name: Check isis shared libraries | |
run: | | |
conda activate asap | |
ldd `which qview` | |
- name: Test for asap | |
run: | | |
conda activate asap | |
asap | |
- name: Download stereo parameter files | |
run: | | |
wget https://raw.githubusercontent.com/NeoGeographyToolkit/StereoPipeline/master/examples/CTX/stereo.nonmap | |
wget https://raw.githubusercontent.com/NeoGeographyToolkit/StereoPipeline/master/examples/CTX/stereo.map | |
- name: Asap notebook run | |
timeout-minutes: 30 | |
run: | | |
conda activate asap | |
asap ctx notebook_pipeline_make_dem B03_010644_1889_XN_08N001W P02_001902_1889_XI_08N001W ./stereo.nonmap --config2 ./stereo.map --img_gsd 25 --dem_gsd 50 --step_kwargs '{"step_13": "--highest_accuracy False --max-num-reference-points 100000 --max-num-source-points 10000"}' | |
- name: LS directories to see what was made | |
continue-on-error: true | |
if: always() | |
run: | | |
ls -lahtr | |
ls ./B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/* -lahtr | |
ls ./*/*/* -lahtr | |
- name: Archive Final Notebook from Papermill | |
uses: actions/upload-artifact@v3 | |
if: always() | |
with: | |
name: final_notebook | |
path: | | |
*.log | |
*.ipynb | |
./B03_010644_1889_XN_08N001W_P02_001902_1889_XI_08N001W/*.json |