Update python requirements and create slim docker image #434
Workflow file for this run
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| name: Build scpca-tools images | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| branches: | |
| - main | |
| env: | |
| REGISTRY: ghcr.io | |
| REGISTRY_USER: alexslemonade | |
| jobs: | |
| build_and_push: | |
| runs-on: ubuntu-22.04 | |
| permissions: | |
| contents: read | |
| packages: write | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - image_name: scpcatools | |
| dockerfile: Dockerfile | |
| - image_name: scpcatools-slim | |
| dockerfile: scpcatools_slim.Dockerfile | |
| - image_name: scpcatools-reports | |
| dockerfile: scpcatools_reports.Dockerfile | |
| - image_name: scpcatools-scvi | |
| dockerfile: scpcatools_scvi.Dockerfile | |
| - image_name: scpcatools-seurat | |
| dockerfile: scpcatools_seurat.Dockerfile | |
| steps: | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Docker login | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Docker metadata | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.REGISTRY_USER }}/${{ matrix.image_name }} | |
| tags: | | |
| type=semver,pattern={{raw}} | |
| type=edge,branch=main | |
| - uses: docker/build-push-action@v5 | |
| with: | |
| context: "{{defaultContext}}:docker" | |
| file: ${{ matrix.dockerfile }} | |
| push: ${{ github.event_name == 'push' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha |