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Adjoint event#1539

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paulstapor wants to merge 79 commits intodevelopAMICI-dev/AMICI:developfrom adjoint_eventAMICI-dev/AMICI:adjoint_eventCopy head branch name to clipboard

+398-157

Commits

Commits on Jun 16, 2021

• add model specific adjoint event update function signatures

  paulstapor

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  2d2b51f

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Commits on Jun 18, 2021

• add symbolic computations for adjoit updates at heavisides

  paulstapor

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• adding interface to using model specific implementations of deltaxB and deltaqB

  paulstapor

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  9caa9e5

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Commits on Jul 5, 2021

• adjoint heavisides are working now

  paulstapor

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  2b9c778

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Commits on Jul 12, 2021

• heaviside functions working, events only for not state-dependent triggers

  paulstapor

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  649c999

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Commits on Jul 25, 2021

• not too complex events work in backward mode. Lets try to tackle the complex ones

  paulstapor

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Commits on Jul 27, 2021

• functionality implemented, jst need to clean up

  paulstapor

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Commits on Aug 5, 2021

• added tests

  paulstapor

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• tighten tolerances for adjoints

  paulstapor

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  73fefb2

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• Merge branch 'develop' into adjoint_event

  paulstapor

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Commits on Oct 9, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Oct 17, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

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• Update changed signature in matlab code generation

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• Update changed signature in test model

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  9144dc4

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• Regenerate matlab models

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  2534ce4

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• Fix doc

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• Remove unused Model::updateHeavisideB_eventwise

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• swig ignore Model::fxBdot

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  83c229c

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• remove dead code

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Commits on Oct 18, 2021

• cleanup

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• sphinx?

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  ee0b105

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• swig ignore fxbdot

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Commits on Oct 20, 2021

• Merge branch 'develop' into adjoint_event

  

  Fabian Fröhlich

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Commits on Nov 5, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Nov 18, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Dec 10, 2021

• Merge branch 'develop' into adjoint_event

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• Merge branch 'develop' into adjoint_event

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  b39c7bb

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• remove empty tests/estimate_Leonhardt_NBM2014.py

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Commits on Dec 11, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Jan 10, 2022

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Feb 8, 2022

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Feb 10, 2022

• last status of work in progress

  paulstapor

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  b27bdf1

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• Merge branch 'adjoint_event' of github.com:ICB-DCM/AMICI into adjoint_event

  paulstapor

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Commits on Jan 31, 2023

• Merge remote-tracking branch 'origin/develop' into adjoint_event

  dweindl

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  f77b601

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• fixup merge

  dweindl

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  a5523b1

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• fixup

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• Merge branch 'develop' into adjoint_event

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• Merge remote-tracking branch 'origin/develop' into adjoint_event

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  d5e421e

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• verbose

  dweindl

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  e6a8014

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• fix windows?

  dweindl

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  ccb0677

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Commits on Feb 1, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Feb 11, 2023

• fdeltaxB tcl

  dweindl

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  489e75a

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• fixup

  dweindl

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  fdcf30a

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• regenerate models

  dweindl

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  59a5e44

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• fix sign - fixes test_models[nested_events]

  dweindl

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  5d589ff

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• Cleanup

  dweindl

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• check_trajectories_with_adjoint_sensitivities

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  cf2ee13

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• cleanup

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  346729a

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• ..

  dweindl

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  e7b99ce

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Commits on Feb 12, 2023

• cleanup

  dweindl

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• cleanup

  dweindl

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  c06b487

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Commits on Feb 13, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

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Commits on Feb 14, 2023

• Fix hdf5.cpp

  stephanmg

  committed
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Commits on May 11, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

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• Merge branch 'develop' into adjoint_event

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Commits on May 16, 2023

• Merge branch 'develop' into adjoint_event

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• ..

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• error messages

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• eps = 1e-5

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• Merge remote-tracking branch 'origin/develop' into adjoint_event

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Commits on May 17, 2023

• cleanup

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  18e6e65

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• ..

  dweindl

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  2244ba1

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• remove dbg?

  dweindl

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• unrelated

  dweindl

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• Add test for events with state-dependent ddeltaxd{t,p,x} (#2092)

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• Revert "remove dbg?"

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  ec1903b

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• fix minus

  dweindl

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Commits on May 24, 2023

• Merge branch 'develop' into adjoint_event

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Commits on May 25, 2023

• Merge branch 'develop' into adjoint_event

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Commits on Dec 12, 2023

• Merge branch 'develop' into adjoint_event

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• black

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Commits on Dec 14, 2023

• Merge branch 'develop' into adjoint_event

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Commits on Jan 16, 2024

• Merge branch 'develop' into adjoint_event

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Commits on Oct 9, 2024

• Merge branch 'develop' into adjoint_event

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• simplify

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• Merge branch 'develop' into adjoint_event

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  f66c6a5

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• simplify, stricter tolerances, dbg output

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• ..

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Commits on Oct 10, 2024

• Benchmark problems look good

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