config.yaml

# Critical: input files for HSDSnake, please only substitute the species name to yours, keep the input file format, such as Arabidopsis_thaliana.fa, Arabidopsis_thaliana.interproscan.tsv, Arabidopsis_thaliana.ko.txt
samples:
  - Arabidopsis_thaliana
  - Chlamydomonas_reinhardtii
 
genomes:
  Arabidopsis_thaliana:
    proteins: "data/Arabidopsis_thaliana.fa"
    interproscan: "data/Arabidopsis_thaliana.interproscan.tsv"
    KEGG: "data/Arabidopsis_thaliana.ko.txt"

  Chlamydomonas_reinhardtii:
    proteins: "data/Chlamydomonas_reinhardtii.fa"
    interproscan: "data/Chlamydomonas_reinhardtii.interproscan.tsv"
    KEGG: "data/Chlamydomonas_reinhardtii.ko.txt"


################Above are the directories for fasta, interproscan, ko result you shall modify ##########

HSDFinder: 
  - "/scripts/hsdfinder/"

HSD_identity:
- 90
- 80
- 70
- 60
- 50

HSD_variance:
- 100
- 70
- 50
- 30
- 10

HSDecipher: "/scripts/hsdecipher/"

########Feel free to modidy the heatmap hight and width depending on your dataset scale ###############

heatmap_hight: 20 

heatmap_width: 30