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oei.owl
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY reegle "http://reegle.info/glossary/" >
<!ENTITY bfo "http://www.ifomis.org/bfo/1.1#" >
<!ENTITY oei "http://purl.org/oei/devel/owl#" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY obo "http://purl.obolibrary.org/obo/" >
<!ENTITY dc "http://purl.org/dc/elements/1.1/" >
<!ENTITY om "http://www.w3.org/2007/ont/unit#" >
<!ENTITY muo "http://purl.oclc.org/NET/muo/muo#" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
]>
<rdf:RDF xmlns="http://purl.org/oei/devel/owl#"
xml:base="http://purl.org/oei/devel/owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:oei="http://purl.org/oei/devel/owl#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:om="http://www.w3.org/2007/ont/unit#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
xmlns:reegle="http://reegle.info/glossary/"
xmlns:muo="http://purl.oclc.org/NET/muo/muo#">
<owl:Ontology rdf:about="http://purl.org/oei/devel/owl">
<dc:creator xml:lang="en">Aaron Beach</dc:creator>
<dc:subject xml:lang="en">An ontology for the annotation of investigations related to Energy Informatics.</dc:subject>
<dc:creator xml:lang="en">Jie Zheng</dc:creator>
<dc:creator xml:lang="en">Michael E. Cotterell</dc:creator>
<dc:title xml:lang="en">Ontology for Energy Investigations</dc:title>
<dc:creator xml:lang="en">Qin Sun</dc:creator>
<dc:description xml:lang="en">The Ontology for Energy Investigations (OEI) is an effort to provide a resource for annotating investigations in Energy Informatics.</dc:description>
<dc:creator xml:lang="en">Zhengkai Wu</dc:creator>
<owl:imports rdf:resource="http://purl.oclc.org/NET/muo/muo#"/>
<owl:imports rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<owl:AnnotationProperty rdf:about="&dc;description"/>
<owl:AnnotationProperty rdf:about="&obo;IAO_0100001">
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the term to another term that can be used as a substitute</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000115">
<rdfs:label xml:lang="en">definition</rdfs:label>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;OBI_0000293">
<rdfs:label xml:lang="en">has_specified_input</rdfs:label>
<obo:IAO_0000116 rdf:datatype="&xsd;string">8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.</obo:IAO_0000116>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Melanie Coutot</obo:IAO_0000117>
<obo:IAO_0000111 rdf:datatype="&xsd;string">has_specified_input</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000112 xml:lang="en">see is_input_of example_of_usage</obo:IAO_0000112>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000424">
<rdfs:label xml:lang="en">expand expression to</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
Label: has plasma membrane part
Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
</obo:IAO_0000112>
<obo:IAO_0000111 xml:lang="en">expand expression to</obo:IAO_0000111>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000116">
<rdfs:label xml:lang="en">editor note</rdfs:label>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000113">
<rdfs:label xml:lang="en">in branch</rdfs:label>
<obo:IAO_0000115 xml:lang="en">An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
<obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000114">
<rdfs:label xml:lang="en">has curation status</rdfs:label>
<obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has curation status</obo:IAO_0000111>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000119">
<rdfs:label xml:lang="en">definition source</rdfs:label>
<obo:IAO_0000119 rdf:datatype="&xsd;string">Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000427">
<rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">antisymmetric property</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">part_of antisymmetric property xsd:true</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">use boolean value xsd:true to indicate that the property is an antisymmetric property</obo:IAO_0000115>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;OBI_0000299">
<rdfs:label xml:lang="en">has_specified_output</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000111 rdf:datatype="&xsd;string">has_specified_output</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000117">
<rdfs:label xml:lang="en">term editor</rdfs:label>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000426">
<rdfs:label xml:lang="en">first order logic expression</rdfs:label>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">first order logic expression</obo:IAO_0000111>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000589">
<rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
<obo:IAO_0000116 rdf:datatype="&xsd;string">The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which is unique across the OBO Foundry.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry <http://obofoundry.org/></obo:IAO_0000119>
<obo:IAO_0000111 xml:lang="en">OBO foundry unique label</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000231">
<rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">has obsolescence reason</obo:IAO_0000111>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000118">
<rdfs:label xml:lang="en">alternative term</rdfs:label>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000425">
<rdfs:label xml:lang="en">expand assertion to</rdfs:label>
<obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
Label: spatially disjoint from
Annotations: expand_assertion_to "DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
</obo:IAO_0000112>
<obo:IAO_0000111 xml:lang="en">expand assertion to</obo:IAO_0000111>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000111">
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">editor preferred term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000112">
<rdfs:label xml:lang="en">example of usage</rdfs:label>
<obo:IAO_0000115 xml:lang="en">A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&dc;subject"/>
<owl:AnnotationProperty rdf:about="&obo;IAO_0010000">
<rdfs:label>axiom id</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000411">
<rdfs:label rdf:datatype="&xsd;string">is denotator type</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000116 rdf:datatype="&xsd;string">In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')</obo:IAO_0000116>
<obo:IAO_0000115 rdf:datatype="&xsd;string">relates an class defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000598">
<rdfs:label>has ID policy for</rdfs:label>
<obo:IAO_0000115>Relating an ontology used to record id policy to the ontology namespace whose policy it manages</obo:IAO_0000115>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000112>Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
<obo:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000597">
<rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000115>Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms</obo:IAO_0000115>
<obo:IAO_0000112>Datatype: idrange:1
Annotations: 'has ID range allocated to': "Chris Mungall"
EquivalentTo: xsd:integer[> 2151 , <= 2300]
</obo:IAO_0000112>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&obo;IAO_0000596">
<rdfs:label xml:lang="en">has ID digit count</rdfs:label>
<obo:IAO_0000112>Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000115>Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix" annotation property value concatenated with an integer in the id range (left padded with "0"s to make this many digits)</obo:IAO_0000115>
</owl:AnnotationProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000050">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">is part of</rdfs:label>
<obo:IAO_0000116 xml:lang="en">There is controversy about this relation intended to represent the relation between some arbitrary physical thing that is used as a represention/proxy/pointer to something else</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">part of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000001"/>
<rdfs:range rdf:resource="&obo;BFO_0000001"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000051"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000082"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000051">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">has part</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000052 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000052">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label xml:lang="en">inheres in</rdfs:label>
<obo:IAO_0000118 xml:lang="en">inheres_in</obo:IAO_0000118>
<rdfs:range rdf:resource="&obo;BFO_0000004"/>
<rdfs:domain rdf:resource="&obo;BFO_0000005"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000053"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000070"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000053 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000053">
<rdfs:label rdf:datatype="&xsd;string">bearer_of</rdfs:label>
<rdfs:label xml:lang="en">is bearer of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">bearer of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">bearer_of</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000004"/>
<rdfs:range rdf:resource="&obo;BFO_0000005"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000054">
<rdfs:label xml:lang="en">is realized by</rdfs:label>
<obo:IAO_0000118 xml:lang="en">realized by</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">realized_by</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000055 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000055">
<rdfs:label xml:lang="en">realizes</rdfs:label>
<rdfs:domain rdf:resource="&obo;BFO_0000007"/>
<rdfs:range rdf:resource="&obo;BFO_0000017"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000054"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000056 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000056">
<rdfs:label xml:lang="en">participates in</rdfs:label>
<obo:IAO_0000118 xml:lang="en">participates_in</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000057 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000057">
<rdfs:label xml:lang="en">has participant</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_participant</obo:IAO_0000118>
<rdfs:range rdf:resource="&obo;BFO_0000002"/>
<rdfs:domain rdf:resource="&obo;BFO_0000007"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000056"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;BFO_0000055"/>
<rdf:Description rdf:about="&obo;BFO_0000052"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000058 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000058">
<rdfs:label xml:lang="en">is concretization of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">concretization of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">concretization_of</obo:IAO_0000118>
<rdfs:range rdf:resource="&obo;BFO_0000020"/>
<rdfs:domain rdf:resource="&obo;BFO_0000031"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000059 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000059">
<rdfs:label xml:lang="en">concretizes</rdfs:label>
<rdfs:domain rdf:resource="&obo;BFO_0000020"/>
<rdfs:range rdf:resource="&obo;BFO_0000031"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000058"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000060 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000060">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label xml:lang="en">is immediately preceded by</rdfs:label>
<obo:IAO_0000118 xml:lang="en">immediately preceded by</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">immediately_preceded_by</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000062"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000061 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000061">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label xml:lang="en">immediately precedes</rdfs:label>
<obo:IAO_0000118 xml:lang="en">immediately_precedes</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000007"/>
<rdfs:range rdf:resource="&obo;BFO_0000007"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000060"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000063"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000062">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">is preceded by</rdfs:label>
<obo:IAO_0000118 xml:lang="en">preceded by</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">preceded_by</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000063">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">precedes</rdfs:label>
<rdfs:range rdf:resource="&obo;BFO_0000007"/>
<rdfs:domain rdf:resource="&obo;BFO_0000007"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000062"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000064 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000064">
<rdfs:label xml:lang="en">is course of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">course of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">course_of</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000057"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000065 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000065">
<rdfs:label xml:lang="en">has course</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_course</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000002"/>
<rdfs:range rdf:resource="&obo;BFO_0000007"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000056"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000064"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000066 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000066">
<rdfs:label xml:lang="en">occurs in</rdfs:label>
<obo:IAO_0000118 xml:lang="en">occurs_in</obo:IAO_0000118>
<rdfs:range rdf:resource="&obo;BFO_0000004"/>
<rdfs:domain rdf:resource="&obo;BFO_0000007"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000067"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;BFO_0000066"/>
<rdf:Description rdf:about="&obo;BFO_0000050"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;BFO_0000050"/>
<rdf:Description rdf:about="&obo;BFO_0000066"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000067 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000067">
<rdfs:label xml:lang="en">has site of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_site_of</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000068 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000068">
<rdfs:label xml:lang="en">begins to exist during</rdfs:label>
<obo:IAO_0000118 xml:lang="en">begins_to_exist_during</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000002"/>
<rdfs:range rdf:resource="&obo;BFO_0000007"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000056"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000069 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000069">
<rdfs:label xml:lang="en">ceases to exist during</rdfs:label>
<obo:IAO_0000118 xml:lang="en">ceases_to_exist_during</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000002"/>
<rdfs:range rdf:resource="&obo;BFO_0000007"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000056"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000070 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000070">
<rdfs:label xml:lang="en">s depends on</rdfs:label>
<obo:IAO_0000118 xml:lang="en">s_depends_on</obo:IAO_0000118>
<rdfs:range rdf:resource="&obo;BFO_0000004"/>
<rdfs:domain rdf:resource="&obo;BFO_0000020"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000071 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000071">
<rdfs:label xml:lang="en">has granular part</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_granular_part</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000072 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000072">
<rdfs:label xml:lang="en">has granular process part</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_granular_process_part</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000073 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000073">
<rdfs:label xml:lang="en">is granular part of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">granular part of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">granular_part_of</obo:IAO_0000118>
<rdfs:range rdf:resource="&obo;BFO_0000040"/>
<rdfs:domain rdf:resource="&obo;BFO_0000040"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000050"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000071"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000074 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000074">
<rdfs:label xml:lang="en">is granular part of process</rdfs:label>
<obo:IAO_0000118 xml:lang="en">granular part of process</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">granular_part_of_process</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000007"/>
<rdfs:range rdf:resource="&obo;BFO_0000007"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000050"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000072"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000075 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000075">
<rdfs:label xml:lang="en">is aggregate of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">aggregate of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">aggregate_of</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000050"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000076 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000076">
<rdfs:label xml:lang="en">is fiat part of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">fiat part of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">fiat_part_of</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000050"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000077 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000077">
<rdfs:label xml:lang="en">has participant beginning to exist</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_participant_beginning_to_exist</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000057"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000068"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000078 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000078">
<rdfs:label xml:lang="en">has participant ceasing to exist</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_participant_ceasing_to_exist</obo:IAO_0000118>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000057"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000069"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000079 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000079">
<rdfs:label xml:lang="en">is function of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">function of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">function_of</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000034"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000052"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000080 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000080">
<rdfs:label xml:lang="en">is quality of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">quality of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">quality_of</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000019"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000052"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000081 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000081">
<rdfs:label xml:lang="en">is role of</rdfs:label>
<obo:IAO_0000118 xml:lang="en">role of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">role_of</obo:IAO_0000118>
<rdfs:domain rdf:resource="&obo;BFO_0000023"/>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000052"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000082 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000082">
<rdfs:label xml:lang="en">is located in</rdfs:label>
<obo:IAO_0000118 xml:lang="en">located in</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">located_in</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000083 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000083">
<rdfs:label xml:lang="en">is located at</rdfs:label>
<obo:IAO_0000118 xml:lang="en">located at</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">located_at</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000084 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000084">
<rdfs:label xml:lang="en">g depends on</rdfs:label>
<obo:IAO_0000118 xml:lang="en">g_depends_on</obo:IAO_0000118>
<rdfs:range rdf:resource="&obo;BFO_0000004"/>
<rdfs:domain rdf:resource="&obo;BFO_0000031"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000085 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000085">
<rdfs:label xml:lang="en">has function</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_function</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000086 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000086">
<rdfs:label xml:lang="en">has quality</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_quality</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000087 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000087">
<rdfs:label xml:lang="en">has role</rdfs:label>
<obo:IAO_0000118 xml:lang="en">has_role</obo:IAO_0000118>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000039 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000039">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<rdfs:range rdf:resource="&obo;IAO_0000003"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000136">
<rdfs:label xml:lang="en">is about</rdfs:label>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<obo:IAO_0000112 xml:lang="en">This document is about information artifacts and their representations</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">is_about is a (currently) primitive relation that relates an information artifact to an entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:domain rdf:resource="&obo;IAO_0000030"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000142 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000142">
<rdfs:label xml:lang="en">mentions</rdfs:label>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. P4 RC1 munges our GCI so remove it for now: mentions some entity equivalentTo has_part some ('generically denotes' some entity)</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg: Add this relation following conversation with Jonathan Rees that N&S GCI for is_about was too strong. Really it was simply sufficient. To effect this change we introduce this relation, which is subproperty of is_about, and have previous GCI use this relation "mentions" in it's (logical) definition</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">An information artifact IA mentions an entity E exactly when it has a component/part that denotes E</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
<rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000219 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000219">
<rdfs:label xml:lang="en">denotes</rdfs:label>
<obo:IAO_0000116 xml:lang="en">2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive.
g denotes r =def
r is a portion of reality
there is some c that is a concretization of g
every c that is a concretization of g specifically denotes r</obo:IAO_0000116>
<obo:IAO_0000112 xml:lang="en">A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named.</obo:IAO_0000112>
<obo:IAO_0000119 xml:lang="en">Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan</obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">denotes is a primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
<rdfs:comment>
<rdf:Description/>
</rdfs:comment>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000221 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000221">
<rdfs:label xml:lang="en">is quality measurement of</rdfs:label>
<obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000116 xml:lang="en">From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important]
This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
--
From the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009]
unit of measure is a quality, e.g. the length of a ruler.
[We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label]
[Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory]
a represents b means either a denotes b or a describes
describe:
a describes b means a is about b and a allows an inference of at least one quality of b
We have had a long discussion about denotes versus describes.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully.
a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second meeting on IAO:
An attempt at defining assay using Barry's "reliability" wording
assay:
process and has_input some material entity
and has_output some information content entity
and which is such that instances of this process type reliably generate
outputs that describes the input.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">m is a quality measurement of q at t when
q is a quality
there is a measurement process p that has specified output m, a measurement datum, that is about q</obo:IAO_0000115>
<rdfs:range rdf:resource="&obo;BFO_0000019"/>
<rdfs:domain rdf:resource="&obo;IAO_0000109"/>
<rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000407 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000407">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label xml:lang="en">has coordinate unit label</rdfs:label>
<rdfs:comment xml:lang="en">relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<rdfs:domain rdf:resource="&obo;IAO_0000400"/>
<rdfs:range rdf:resource="&obo;UO_0000001"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000413 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000413">
<rdfs:label xml:lang="en">is duration of</rdfs:label>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">relates a process to a time-measurement-datum that represents the duration of the process</obo:IAO_0000115>
<rdfs:range rdf:resource="&obo;BFO_0000007"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
<rdfs:domain rdf:resource="&obo;IAO_0000416"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000417 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000417">
<rdfs:label xml:lang="en">is quality measured as</rdfs:label>
<obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">inverse of the relation of is quality measurement of</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<owl:inverseOf rdf:resource="&obo;IAO_0000221"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000418 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000418">
<rdfs:label xml:lang="en">is quality specification of</rdfs:label>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">a relation between a data item and a quality of a material entity where the material entity is the specified output of a material transformation which achieves an objective specification that indicates the intended value of the specified quality.</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000419 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000419">
<rdfs:label xml:lang="en">quality is specified as</rdfs:label>
<obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">inverse of the relation of is quality specification of</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<owl:inverseOf rdf:resource="&obo;IAO_0000418"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000581 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000581">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label xml:lang="en">has time stamp</rdfs:label>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000123"/>
<rdfs:range rdf:resource="&obo;IAO_0000416"/>
<rdfs:domain rdf:resource="&obo;IAO_0000582"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000583 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000583">
<rdfs:label xml:lang="en">has measurement datum</rdfs:label>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">relates a time stamped measurement datum to the measurement datum that was measured</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000123"/>
<rdfs:domain rdf:resource="&obo;IAO_0000582"/>
<rdfs:range>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;IAO_0000109"/>
<owl:Class>
<owl:complementOf rdf:resource="&obo;IAO_0000416"/>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</rdfs:range>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000107 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000107">
<rdfs:label>provides_service_consumer_with</rdfs:label>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<rdfs:domain rdf:resource="&obo;OBI_0001173"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000124 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000124">
<rdfs:label>is_supported_by_data</rdfs:label>
<obo:IAO_0000119>Philly 2011 workshop</obo:IAO_0000119>
<obo:IAO_0000115>The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process</obo:IAO_0000115>
<obo:IAO_0000112>The relation between the conclusion "Gene tpbA is involved in EPS production" and the data items produced using two sets of organisms, one being a tpbA knockout, the other being tpbA wildtype tested in polysacharide production assays and analyzed using an ANOVA. </obo:IAO_0000112>
<rdfs:range rdf:resource="&obo;IAO_0000027"/>
<rdfs:domain rdf:resource="&obo;IAO_0000144"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000293">
<rdfs:label xml:lang="en">has_specified_input</rdfs:label>
<obo:IAO_0000116 rdf:datatype="&xsd;string">8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.</obo:IAO_0000116>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Melanie Coutot</obo:IAO_0000117>
<obo:IAO_0000111 rdf:datatype="&xsd;string">has_specified_input</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000112 xml:lang="en">see is_input_of example_of_usage</obo:IAO_0000112>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000057"/>
<rdfs:domain rdf:resource="&obo;OBI_0000011"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000295 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000295">
<rdfs:label xml:lang="en">is_specified_input_of</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000111 rdf:datatype="&xsd;string">is_specified_input_of</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000112 xml:lang="en">some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay</obo:IAO_0000112>